Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0640

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0637 and EX28DRAFT_0638 are separated by 11 nucleotidesEX28DRAFT_0638 and EX28DRAFT_0639 are separated by 82 nucleotidesEX28DRAFT_0639 and EX28DRAFT_0640 overlap by 4 nucleotidesEX28DRAFT_0640 and EX28DRAFT_0641 overlap by 4 nucleotides EX28DRAFT_0637: EX28DRAFT_0637 - tRNA, at 632,769 to 632,842 _0637 EX28DRAFT_0638: EX28DRAFT_0638 - tRNA, at 632,854 to 632,940 _0638 EX28DRAFT_0639: EX28DRAFT_0639 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,023 to 633,739 _0639 EX28DRAFT_0640: EX28DRAFT_0640 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,736 to 634,611 _0640 EX28DRAFT_0641: EX28DRAFT_0641 - ABC-type branched-chain amino acid transport system, permease component, at 634,608 to 635,885 _0641 Position (kb) 633 634 635Strain fitness (log2 ratio) -1 0 1 2at 632.967 kb on + strandat 632.967 kb on + strandat 633.118 kb on - strand, within EX28DRAFT_0639at 633.118 kb on - strand, within EX28DRAFT_0639at 633.118 kb on - strand, within EX28DRAFT_0639at 633.514 kb on - strand, within EX28DRAFT_0639at 633.514 kb on - strand, within EX28DRAFT_0639at 633.514 kb on - strand, within EX28DRAFT_0639at 633.514 kb on - strand, within EX28DRAFT_0639at 633.526 kb on + strand, within EX28DRAFT_0639at 633.535 kb on + strand, within EX28DRAFT_0639at 633.740 kb on - strandat 633.826 kb on - strand, within EX28DRAFT_0640at 633.899 kb on - strand, within EX28DRAFT_0640at 633.902 kb on - strand, within EX28DRAFT_0640at 633.936 kb on + strand, within EX28DRAFT_0640at 633.952 kb on - strand, within EX28DRAFT_0640at 634.164 kb on + strand, within EX28DRAFT_0640at 634.203 kb on + strand, within EX28DRAFT_0640at 634.203 kb on + strand, within EX28DRAFT_0640at 634.204 kb on - strand, within EX28DRAFT_0640at 634.351 kb on - strand, within EX28DRAFT_0640at 634.419 kb on + strand, within EX28DRAFT_0640at 634.420 kb on - strand, within EX28DRAFT_0640at 634.424 kb on - strand, within EX28DRAFT_0640at 634.424 kb on - strand, within EX28DRAFT_0640at 634.448 kb on + strand, within EX28DRAFT_0640at 634.449 kb on - strand, within EX28DRAFT_0640at 634.468 kb on - strand, within EX28DRAFT_0640at 634.528 kb on + strandat 634.558 kb on - strandat 634.594 kb on + strandat 634.595 kb on - strandat 634.790 kb on + strand, within EX28DRAFT_0641at 634.791 kb on - strand, within EX28DRAFT_0641at 634.791 kb on - strand, within EX28DRAFT_0641at 634.876 kb on + strand, within EX28DRAFT_0641at 634.876 kb on + strand, within EX28DRAFT_0641at 634.956 kb on + strand, within EX28DRAFT_0641at 634.957 kb on - strand, within EX28DRAFT_0641at 635.039 kb on + strand, within EX28DRAFT_0641at 635.044 kb on + strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.084 kb on + strand, within EX28DRAFT_0641at 635.085 kb on - strand, within EX28DRAFT_0641at 635.090 kb on + strand, within EX28DRAFT_0641at 635.111 kb on - strand, within EX28DRAFT_0641at 635.291 kb on - strand, within EX28DRAFT_0641at 635.392 kb on + strand, within EX28DRAFT_0641at 635.444 kb on - strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.540 kb on - strand, within EX28DRAFT_0641at 635.588 kb on + strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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632,967 + +0.6
632,967 + -0.4
633,118 - EX28DRAFT_0639 0.13 +0.5
633,118 - EX28DRAFT_0639 0.13 -0.2
633,118 - EX28DRAFT_0639 0.13 -0.2
633,514 - EX28DRAFT_0639 0.68 +0.5
633,514 - EX28DRAFT_0639 0.68 +0.1
633,514 - EX28DRAFT_0639 0.68 -0.2
633,514 - EX28DRAFT_0639 0.68 +0.8
633,526 + EX28DRAFT_0639 0.70 -0.5
633,535 + EX28DRAFT_0639 0.71 +0.1
633,740 - -0.1
633,826 - EX28DRAFT_0640 0.10 -0.1
633,899 - EX28DRAFT_0640 0.19 -0.4
633,902 - EX28DRAFT_0640 0.19 +1.1
633,936 + EX28DRAFT_0640 0.23 +0.4
633,952 - EX28DRAFT_0640 0.25 -0.0
634,164 + EX28DRAFT_0640 0.49 +0.4
634,203 + EX28DRAFT_0640 0.53 -0.3
634,203 + EX28DRAFT_0640 0.53 +0.5
634,204 - EX28DRAFT_0640 0.53 -0.2
634,351 - EX28DRAFT_0640 0.70 -0.5
634,419 + EX28DRAFT_0640 0.78 +0.1
634,420 - EX28DRAFT_0640 0.78 +0.7
634,424 - EX28DRAFT_0640 0.79 +0.6
634,424 - EX28DRAFT_0640 0.79 +0.6
634,448 + EX28DRAFT_0640 0.81 +0.5
634,449 - EX28DRAFT_0640 0.81 +0.1
634,468 - EX28DRAFT_0640 0.84 -0.1
634,528 + -0.1
634,558 - -0.9
634,594 + -0.4
634,595 - +0.7
634,790 + EX28DRAFT_0641 0.14 -0.5
634,791 - EX28DRAFT_0641 0.14 -0.8
634,791 - EX28DRAFT_0641 0.14 -0.6
634,876 + EX28DRAFT_0641 0.21 +0.0
634,876 + EX28DRAFT_0641 0.21 -0.0
634,956 + EX28DRAFT_0641 0.27 -0.5
634,957 - EX28DRAFT_0641 0.27 +0.7
635,039 + EX28DRAFT_0641 0.34 -0.1
635,044 + EX28DRAFT_0641 0.34 +0.2
635,045 - EX28DRAFT_0641 0.34 -0.6
635,045 - EX28DRAFT_0641 0.34 +0.2
635,045 - EX28DRAFT_0641 0.34 +0.2
635,084 + EX28DRAFT_0641 0.37 +0.2
635,085 - EX28DRAFT_0641 0.37 +0.8
635,090 + EX28DRAFT_0641 0.38 -0.7
635,111 - EX28DRAFT_0641 0.39 +0.7
635,291 - EX28DRAFT_0641 0.53 -0.8
635,392 + EX28DRAFT_0641 0.61 -0.0
635,444 - EX28DRAFT_0641 0.65 +0.1
635,506 + EX28DRAFT_0641 0.70 -0.9
635,506 + EX28DRAFT_0641 0.70 +0.2
635,506 + EX28DRAFT_0641 0.70 +0.6
635,539 + EX28DRAFT_0641 0.73 +0.1
635,539 + EX28DRAFT_0641 0.73 +0.4
635,540 - EX28DRAFT_0641 0.73 +1.9
635,588 + EX28DRAFT_0641 0.77 +0.3
635,589 - EX28DRAFT_0641 0.77 +0.6
635,589 - EX28DRAFT_0641 0.77 -0.4

Or see this region's nucleotide sequence