Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0628 and EX28DRAFT_0629 are separated by 21 nucleotides EX28DRAFT_0629 and EX28DRAFT_0630 overlap by 4 nucleotides EX28DRAFT_0630 and EX28DRAFT_0631 are separated by 221 nucleotides
EX28DRAFT_0628: EX28DRAFT_0628 - D-cysteine desulfhydrase (EC 4.4.1.15), at 625,277 to 626,263
_0628
EX28DRAFT_0629: EX28DRAFT_0629 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 626,285 to 626,953
_0629
EX28DRAFT_0630: EX28DRAFT_0630 - ABC-type polar amino acid transport system, ATPase component, at 626,950 to 627,702
_0630
EX28DRAFT_0631: EX28DRAFT_0631 - DNA-binding HTH domain-containing proteins, at 627,924 to 628,646
_0631
Position (kb) 626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 625.343 kb on + strand at 625.364 kb on + strand at 625.368 kb on + strand at 625.378 kb on + strand, within EX28DRAFT_0628 at 625.427 kb on - strand, within EX28DRAFT_0628 at 625.642 kb on + strand, within EX28DRAFT_0628 at 625.643 kb on - strand, within EX28DRAFT_0628 at 625.643 kb on - strand, within EX28DRAFT_0628 at 625.736 kb on + strand, within EX28DRAFT_0628 at 625.781 kb on + strand, within EX28DRAFT_0628 at 625.977 kb on + strand, within EX28DRAFT_0628 at 625.977 kb on + strand, within EX28DRAFT_0628 at 626.042 kb on + strand, within EX28DRAFT_0628 at 626.042 kb on + strand, within EX28DRAFT_0628 at 626.042 kb on + strand, within EX28DRAFT_0628 at 626.043 kb on - strand, within EX28DRAFT_0628 at 626.343 kb on + strand at 626.348 kb on - strand at 626.348 kb on - strand at 626.410 kb on - strand, within EX28DRAFT_0629 at 626.457 kb on - strand, within EX28DRAFT_0629 at 626.457 kb on - strand, within EX28DRAFT_0629 at 626.457 kb on - strand, within EX28DRAFT_0629 at 626.458 kb on + strand, within EX28DRAFT_0629 at 626.458 kb on + strand, within EX28DRAFT_0629 at 626.459 kb on - strand, within EX28DRAFT_0629 at 626.500 kb on + strand, within EX28DRAFT_0629 at 626.500 kb on + strand, within EX28DRAFT_0629 at 626.507 kb on + strand, within EX28DRAFT_0629 at 626.507 kb on + strand, within EX28DRAFT_0629 at 626.507 kb on + strand, within EX28DRAFT_0629 at 626.508 kb on - strand, within EX28DRAFT_0629 at 626.588 kb on + strand, within EX28DRAFT_0629 at 626.588 kb on + strand, within EX28DRAFT_0629 at 626.761 kb on + strand, within EX28DRAFT_0629 at 626.762 kb on - strand, within EX28DRAFT_0629 at 626.762 kb on - strand, within EX28DRAFT_0629 at 626.850 kb on - strand, within EX28DRAFT_0629 at 626.850 kb on - strand, within EX28DRAFT_0629 at 626.850 kb on - strand, within EX28DRAFT_0629 at 626.850 kb on - strand, within EX28DRAFT_0629 at 626.850 kb on - strand, within EX28DRAFT_0629 at 626.850 kb on - strand, within EX28DRAFT_0629 at 627.094 kb on - strand, within EX28DRAFT_0630 at 627.094 kb on - strand, within EX28DRAFT_0630 at 627.094 kb on - strand, within EX28DRAFT_0630 at 627.094 kb on - strand, within EX28DRAFT_0630 at 627.097 kb on - strand, within EX28DRAFT_0630 at 627.186 kb on - strand, within EX28DRAFT_0630 at 627.268 kb on - strand, within EX28DRAFT_0630 at 627.287 kb on + strand, within EX28DRAFT_0630 at 627.288 kb on - strand, within EX28DRAFT_0630 at 627.339 kb on + strand, within EX28DRAFT_0630 at 627.371 kb on - strand, within EX28DRAFT_0630 at 627.732 kb on + strand at 627.806 kb on - strand at 627.815 kb on - strand at 627.869 kb on + strand at 627.870 kb on - strand at 627.870 kb on - strand at 627.870 kb on - strand at 627.870 kb on - strand at 627.875 kb on - strand at 627.876 kb on + strand at 627.885 kb on + strand at 627.886 kb on - strand at 627.888 kb on + strand at 627.889 kb on - strand at 627.896 kb on - strand at 627.896 kb on - strand at 627.896 kb on - strand at 627.917 kb on - strand at 627.919 kb on + strand at 627.920 kb on - strand at 627.920 kb on - strand at 627.920 kb on - strand at 627.920 kb on - strand at 627.923 kb on + strand at 627.924 kb on - strand at 627.924 kb on - strand at 627.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 625,343 + +1.2 625,364 + -0.9 625,368 + +0.2 625,378 + EX28DRAFT_0628 0.10 -0.1 625,427 - EX28DRAFT_0628 0.15 -0.3 625,642 + EX28DRAFT_0628 0.37 +0.3 625,643 - EX28DRAFT_0628 0.37 +0.1 625,643 - EX28DRAFT_0628 0.37 +0.5 625,736 + EX28DRAFT_0628 0.47 -0.3 625,781 + EX28DRAFT_0628 0.51 +0.2 625,977 + EX28DRAFT_0628 0.71 +0.9 625,977 + EX28DRAFT_0628 0.71 -0.3 626,042 + EX28DRAFT_0628 0.78 +0.1 626,042 + EX28DRAFT_0628 0.78 -2.5 626,042 + EX28DRAFT_0628 0.78 +0.2 626,043 - EX28DRAFT_0628 0.78 -1.7 626,343 + +0.5 626,348 - -0.4 626,348 - -1.1 626,410 - EX28DRAFT_0629 0.19 +1.4 626,457 - EX28DRAFT_0629 0.26 +0.3 626,457 - EX28DRAFT_0629 0.26 -0.6 626,457 - EX28DRAFT_0629 0.26 +0.7 626,458 + EX28DRAFT_0629 0.26 -2.6 626,458 + EX28DRAFT_0629 0.26 -3.7 626,459 - EX28DRAFT_0629 0.26 +0.2 626,500 + EX28DRAFT_0629 0.32 -0.6 626,500 + EX28DRAFT_0629 0.32 -0.7 626,507 + EX28DRAFT_0629 0.33 -0.5 626,507 + EX28DRAFT_0629 0.33 +1.2 626,507 + EX28DRAFT_0629 0.33 -0.9 626,508 - EX28DRAFT_0629 0.33 +0.1 626,588 + EX28DRAFT_0629 0.45 +0.6 626,588 + EX28DRAFT_0629 0.45 +0.9 626,761 + EX28DRAFT_0629 0.71 +1.8 626,762 - EX28DRAFT_0629 0.71 +0.1 626,762 - EX28DRAFT_0629 0.71 +1.6 626,850 - EX28DRAFT_0629 0.84 -0.1 626,850 - EX28DRAFT_0629 0.84 +0.0 626,850 - EX28DRAFT_0629 0.84 +0.0 626,850 - EX28DRAFT_0629 0.84 -3.3 626,850 - EX28DRAFT_0629 0.84 +0.1 626,850 - EX28DRAFT_0629 0.84 +0.7 627,094 - EX28DRAFT_0630 0.19 +0.1 627,094 - EX28DRAFT_0630 0.19 -1.4 627,094 - EX28DRAFT_0630 0.19 -0.0 627,094 - EX28DRAFT_0630 0.19 +0.5 627,097 - EX28DRAFT_0630 0.20 -0.5 627,186 - EX28DRAFT_0630 0.31 +1.5 627,268 - EX28DRAFT_0630 0.42 +0.8 627,287 + EX28DRAFT_0630 0.45 +0.9 627,288 - EX28DRAFT_0630 0.45 -0.5 627,339 + EX28DRAFT_0630 0.52 +0.4 627,371 - EX28DRAFT_0630 0.56 -1.8 627,732 + -0.6 627,806 - -0.3 627,815 - -2.4 627,869 + -1.2 627,870 - -1.0 627,870 - -0.5 627,870 - -0.6 627,870 - +0.3 627,875 - +0.6 627,876 + -0.4 627,885 + +0.2 627,886 - -2.7 627,888 + -0.9 627,889 - -0.0 627,896 - -1.4 627,896 - -0.3 627,896 - -0.1 627,917 - -0.7 627,919 + -1.1 627,920 - -1.1 627,920 - -0.5 627,920 - -1.4 627,920 - -0.8 627,923 + -1.1 627,924 - -0.3 627,924 - -0.3 627,924 - -1.4
Or see this region's nucleotide sequence