Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0583 and EX28DRAFT_0584 are separated by 282 nucleotides EX28DRAFT_0584 and EX28DRAFT_0585 are separated by 53 nucleotides
EX28DRAFT_0583: EX28DRAFT_0583 - metabolite-proton symporter, at 581,428 to 582,741
_0583
EX28DRAFT_0584: EX28DRAFT_0584 - hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region, at 583,024 to 584,673
_0584
EX28DRAFT_0585: EX28DRAFT_0585 - anion transporter, at 584,727 to 586,235
_0585
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 582.243 kb on + strand, within EX28DRAFT_0583 at 582.244 kb on - strand, within EX28DRAFT_0583 at 582.244 kb on - strand, within EX28DRAFT_0583 at 582.281 kb on + strand, within EX28DRAFT_0583 at 582.416 kb on + strand, within EX28DRAFT_0583 at 582.416 kb on + strand, within EX28DRAFT_0583 at 582.506 kb on + strand, within EX28DRAFT_0583 at 582.506 kb on + strand, within EX28DRAFT_0583 at 582.506 kb on + strand, within EX28DRAFT_0583 at 582.506 kb on + strand, within EX28DRAFT_0583 at 582.507 kb on - strand, within EX28DRAFT_0583 at 582.612 kb on + strand at 582.613 kb on - strand at 582.632 kb on + strand at 582.632 kb on + strand at 582.632 kb on + strand at 582.632 kb on + strand at 582.632 kb on + strand at 582.633 kb on - strand at 582.633 kb on - strand at 582.633 kb on - strand at 582.691 kb on + strand at 582.745 kb on + strand at 582.757 kb on - strand at 582.771 kb on - strand at 582.809 kb on + strand at 582.810 kb on - strand at 582.813 kb on + strand at 582.874 kb on - strand at 582.874 kb on - strand at 582.892 kb on - strand at 582.933 kb on - strand at 582.933 kb on - strand at 583.183 kb on - strand at 583.233 kb on - strand, within EX28DRAFT_0584 at 583.233 kb on - strand, within EX28DRAFT_0584 at 583.233 kb on - strand, within EX28DRAFT_0584 at 583.324 kb on + strand, within EX28DRAFT_0584 at 583.436 kb on + strand, within EX28DRAFT_0584 at 583.638 kb on + strand, within EX28DRAFT_0584 at 583.638 kb on + strand, within EX28DRAFT_0584 at 583.639 kb on - strand, within EX28DRAFT_0584 at 583.641 kb on - strand, within EX28DRAFT_0584 at 583.641 kb on - strand, within EX28DRAFT_0584 at 583.796 kb on + strand, within EX28DRAFT_0584 at 583.916 kb on + strand, within EX28DRAFT_0584 at 584.088 kb on - strand, within EX28DRAFT_0584 at 584.094 kb on - strand, within EX28DRAFT_0584 at 584.162 kb on + strand, within EX28DRAFT_0584 at 584.209 kb on - strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.210 kb on + strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.211 kb on - strand, within EX28DRAFT_0584 at 584.238 kb on - strand, within EX28DRAFT_0584 at 584.258 kb on + strand, within EX28DRAFT_0584 at 584.258 kb on + strand, within EX28DRAFT_0584 at 584.259 kb on - strand, within EX28DRAFT_0584 at 584.259 kb on - strand, within EX28DRAFT_0584 at 584.259 kb on - strand, within EX28DRAFT_0584 at 584.266 kb on - strand, within EX28DRAFT_0584 at 584.267 kb on + strand, within EX28DRAFT_0584 at 584.267 kb on + strand, within EX28DRAFT_0584 at 584.267 kb on + strand, within EX28DRAFT_0584 at 584.268 kb on - strand, within EX28DRAFT_0584 at 584.268 kb on - strand, within EX28DRAFT_0584 at 584.268 kb on - strand, within EX28DRAFT_0584 at 584.268 kb on - strand, within EX28DRAFT_0584 at 584.329 kb on - strand, within EX28DRAFT_0584 at 584.420 kb on + strand, within EX28DRAFT_0584 at 584.420 kb on + strand, within EX28DRAFT_0584 at 584.420 kb on + strand, within EX28DRAFT_0584 at 584.420 kb on + strand, within EX28DRAFT_0584 at 584.421 kb on - strand, within EX28DRAFT_0584 at 584.609 kb on + strand at 584.609 kb on + strand at 584.609 kb on + strand at 584.610 kb on - strand at 584.610 kb on - strand at 584.664 kb on + strand at 584.673 kb on + strand at 584.673 kb on + strand at 584.674 kb on - strand at 584.677 kb on - strand at 584.677 kb on - strand at 584.677 kb on - strand at 584.677 kb on - strand at 584.846 kb on - strand at 585.025 kb on + strand, within EX28DRAFT_0585 at 585.025 kb on + strand, within EX28DRAFT_0585 at 585.026 kb on - strand, within EX28DRAFT_0585 at 585.099 kb on + strand, within EX28DRAFT_0585 at 585.415 kb on + strand, within EX28DRAFT_0585 at 585.500 kb on + strand, within EX28DRAFT_0585 at 585.500 kb on + strand, within EX28DRAFT_0585 at 585.501 kb on - strand, within EX28DRAFT_0585 at 585.501 kb on - strand, within EX28DRAFT_0585 at 585.582 kb on - strand, within EX28DRAFT_0585 at 585.582 kb on - strand, within EX28DRAFT_0585 at 585.613 kb on + strand, within EX28DRAFT_0585 at 585.614 kb on - strand, within EX28DRAFT_0585 at 585.614 kb on - strand, within EX28DRAFT_0585 at 585.627 kb on - strand, within EX28DRAFT_0585
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 582,243 + EX28DRAFT_0583 0.62 -0.3 582,244 - EX28DRAFT_0583 0.62 +1.6 582,244 - EX28DRAFT_0583 0.62 +0.5 582,281 + EX28DRAFT_0583 0.65 +0.5 582,416 + EX28DRAFT_0583 0.75 +0.1 582,416 + EX28DRAFT_0583 0.75 +0.6 582,506 + EX28DRAFT_0583 0.82 +0.4 582,506 + EX28DRAFT_0583 0.82 -0.2 582,506 + EX28DRAFT_0583 0.82 -0.6 582,506 + EX28DRAFT_0583 0.82 -0.4 582,507 - EX28DRAFT_0583 0.82 -0.6 582,612 + +0.2 582,613 - +1.2 582,632 + +0.2 582,632 + +0.8 582,632 + -2.5 582,632 + +1.1 582,632 + +0.9 582,633 - +0.3 582,633 - +1.7 582,633 - -0.8 582,691 + +0.4 582,745 + -0.2 582,757 - -2.8 582,771 - -0.3 582,809 + -0.3 582,810 - +0.1 582,813 + +1.1 582,874 - +0.3 582,874 - +1.0 582,892 - +0.4 582,933 - -0.8 582,933 - +0.0 583,183 - -0.1 583,233 - EX28DRAFT_0584 0.13 -0.1 583,233 - EX28DRAFT_0584 0.13 +1.3 583,233 - EX28DRAFT_0584 0.13 +0.1 583,324 + EX28DRAFT_0584 0.18 -0.1 583,436 + EX28DRAFT_0584 0.25 -0.3 583,638 + EX28DRAFT_0584 0.37 +0.2 583,638 + EX28DRAFT_0584 0.37 -0.4 583,639 - EX28DRAFT_0584 0.37 -0.3 583,641 - EX28DRAFT_0584 0.37 -1.2 583,641 - EX28DRAFT_0584 0.37 -0.1 583,796 + EX28DRAFT_0584 0.47 +0.9 583,916 + EX28DRAFT_0584 0.54 -0.9 584,088 - EX28DRAFT_0584 0.64 -0.6 584,094 - EX28DRAFT_0584 0.65 +0.5 584,162 + EX28DRAFT_0584 0.69 +0.7 584,209 - EX28DRAFT_0584 0.72 +0.0 584,210 + EX28DRAFT_0584 0.72 +1.2 584,210 + EX28DRAFT_0584 0.72 -0.7 584,210 + EX28DRAFT_0584 0.72 +0.2 584,210 + EX28DRAFT_0584 0.72 +0.1 584,210 + EX28DRAFT_0584 0.72 +0.7 584,210 + EX28DRAFT_0584 0.72 +0.5 584,210 + EX28DRAFT_0584 0.72 +0.2 584,211 - EX28DRAFT_0584 0.72 -0.9 584,211 - EX28DRAFT_0584 0.72 -0.0 584,211 - EX28DRAFT_0584 0.72 -2.1 584,211 - EX28DRAFT_0584 0.72 +1.0 584,211 - EX28DRAFT_0584 0.72 -1.3 584,211 - EX28DRAFT_0584 0.72 +0.1 584,211 - EX28DRAFT_0584 0.72 -1.4 584,211 - EX28DRAFT_0584 0.72 -1.3 584,238 - EX28DRAFT_0584 0.74 +0.4 584,258 + EX28DRAFT_0584 0.75 -0.7 584,258 + EX28DRAFT_0584 0.75 +0.9 584,259 - EX28DRAFT_0584 0.75 +0.8 584,259 - EX28DRAFT_0584 0.75 -0.4 584,259 - EX28DRAFT_0584 0.75 +0.5 584,266 - EX28DRAFT_0584 0.75 -0.3 584,267 + EX28DRAFT_0584 0.75 -0.1 584,267 + EX28DRAFT_0584 0.75 +0.4 584,267 + EX28DRAFT_0584 0.75 -1.2 584,268 - EX28DRAFT_0584 0.75 +1.3 584,268 - EX28DRAFT_0584 0.75 +0.3 584,268 - EX28DRAFT_0584 0.75 +0.7 584,268 - EX28DRAFT_0584 0.75 -0.4 584,329 - EX28DRAFT_0584 0.79 +0.5 584,420 + EX28DRAFT_0584 0.85 -0.0 584,420 + EX28DRAFT_0584 0.85 +0.5 584,420 + EX28DRAFT_0584 0.85 -0.1 584,420 + EX28DRAFT_0584 0.85 +0.5 584,421 - EX28DRAFT_0584 0.85 -0.2 584,609 + +0.0 584,609 + -1.3 584,609 + -0.4 584,610 - +0.3 584,610 - -0.8 584,664 + +0.5 584,673 + -0.0 584,673 + +0.1 584,674 - -0.6 584,677 - +0.1 584,677 - -1.1 584,677 - -0.1 584,677 - -0.9 584,846 - -1.1 585,025 + EX28DRAFT_0585 0.20 +0.3 585,025 + EX28DRAFT_0585 0.20 -1.3 585,026 - EX28DRAFT_0585 0.20 +0.5 585,099 + EX28DRAFT_0585 0.25 -0.8 585,415 + EX28DRAFT_0585 0.46 +0.3 585,500 + EX28DRAFT_0585 0.51 +0.9 585,500 + EX28DRAFT_0585 0.51 -0.1 585,501 - EX28DRAFT_0585 0.51 -0.1 585,501 - EX28DRAFT_0585 0.51 -0.0 585,582 - EX28DRAFT_0585 0.57 -1.1 585,582 - EX28DRAFT_0585 0.57 +0.2 585,613 + EX28DRAFT_0585 0.59 +0.1 585,614 - EX28DRAFT_0585 0.59 +0.5 585,614 - EX28DRAFT_0585 0.59 -0.7 585,627 - EX28DRAFT_0585 0.60 -1.2
Or see this region's nucleotide sequence