Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0580

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0578 and EX28DRAFT_0579 are separated by 215 nucleotidesEX28DRAFT_0579 and EX28DRAFT_0580 overlap by 4 nucleotidesEX28DRAFT_0580 and EX28DRAFT_0581 are separated by 92 nucleotidesEX28DRAFT_0581 and EX28DRAFT_0582 overlap by 26 nucleotides EX28DRAFT_0578: EX28DRAFT_0578 - Uncharacterized protein conserved in bacteria, at 576,991 to 577,788 _0578 EX28DRAFT_0579: EX28DRAFT_0579 - Uncharacterized protein conserved in bacteria (DUF2256), at 578,004 to 578,150 _0579 EX28DRAFT_0580: EX28DRAFT_0580 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 578,147 to 579,676 _0580 EX28DRAFT_0581: EX28DRAFT_0581 - Transcriptional regulator, at 579,769 to 580,668 _0581 EX28DRAFT_0582: EX28DRAFT_0582 - ABC-type molybdate transport system, periplasmic component, at 580,643 to 581,431 _0582 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1at 577.359 kb on + strand, within EX28DRAFT_0578at 577.515 kb on + strand, within EX28DRAFT_0578at 577.515 kb on + strand, within EX28DRAFT_0578at 577.515 kb on + strand, within EX28DRAFT_0578at 577.516 kb on - strand, within EX28DRAFT_0578at 577.696 kb on - strand, within EX28DRAFT_0578at 577.784 kb on - strandat 577.843 kb on - strandat 577.885 kb on + strandat 577.890 kb on + strandat 577.891 kb on - strandat 577.899 kb on + strandat 577.900 kb on - strandat 577.995 kb on - strandat 578.116 kb on - strand, within EX28DRAFT_0579at 578.116 kb on - strand, within EX28DRAFT_0579at 578.229 kb on - strandat 578.229 kb on - strandat 578.473 kb on + strand, within EX28DRAFT_0580at 578.634 kb on + strand, within EX28DRAFT_0580at 578.635 kb on - strand, within EX28DRAFT_0580at 578.751 kb on - strand, within EX28DRAFT_0580at 578.869 kb on + strand, within EX28DRAFT_0580at 579.099 kb on - strand, within EX28DRAFT_0580at 579.317 kb on + strand, within EX28DRAFT_0580at 579.317 kb on + strand, within EX28DRAFT_0580at 579.329 kb on + strand, within EX28DRAFT_0580at 579.329 kb on + strand, within EX28DRAFT_0580at 579.329 kb on + strand, within EX28DRAFT_0580at 579.330 kb on - strand, within EX28DRAFT_0580at 579.417 kb on - strand, within EX28DRAFT_0580at 579.417 kb on - strand, within EX28DRAFT_0580at 579.434 kb on + strand, within EX28DRAFT_0580at 579.442 kb on + strand, within EX28DRAFT_0580at 579.442 kb on + strand, within EX28DRAFT_0580at 579.442 kb on + strand, within EX28DRAFT_0580at 579.451 kb on + strand, within EX28DRAFT_0580at 579.451 kb on + strand, within EX28DRAFT_0580at 579.451 kb on + strand, within EX28DRAFT_0580at 579.452 kb on - strand, within EX28DRAFT_0580at 579.455 kb on + strand, within EX28DRAFT_0580at 579.455 kb on + strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.456 kb on - strand, within EX28DRAFT_0580at 579.481 kb on + strand, within EX28DRAFT_0580at 579.679 kb on + strandat 579.679 kb on + strandat 579.680 kb on - strandat 579.680 kb on - strandat 579.712 kb on + strandat 579.724 kb on - strandat 579.824 kb on - strandat 579.828 kb on + strandat 579.852 kb on + strandat 579.956 kb on + strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 579.957 kb on - strand, within EX28DRAFT_0581at 580.091 kb on - strand, within EX28DRAFT_0581at 580.096 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.147 kb on - strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.273 kb on + strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.274 kb on - strand, within EX28DRAFT_0581at 580.351 kb on + strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.352 kb on - strand, within EX28DRAFT_0581at 580.353 kb on + strand, within EX28DRAFT_0581at 580.354 kb on - strand, within EX28DRAFT_0581at 580.472 kb on + strand, within EX28DRAFT_0581at 580.473 kb on - strand, within EX28DRAFT_0581at 580.615 kb on + strandat 580.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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577,359 + EX28DRAFT_0578 0.46 -0.2
577,515 + EX28DRAFT_0578 0.66 -0.1
577,515 + EX28DRAFT_0578 0.66 -0.7
577,515 + EX28DRAFT_0578 0.66 -0.0
577,516 - EX28DRAFT_0578 0.66 -0.6
577,696 - EX28DRAFT_0578 0.88 -1.1
577,784 - +0.3
577,843 - -0.6
577,885 + -0.1
577,890 + +0.3
577,891 - +0.4
577,899 + -0.5
577,900 - +0.6
577,995 - +0.2
578,116 - EX28DRAFT_0579 0.76 +1.6
578,116 - EX28DRAFT_0579 0.76 +0.3
578,229 - -0.2
578,229 - -0.3
578,473 + EX28DRAFT_0580 0.21 +0.1
578,634 + EX28DRAFT_0580 0.32 +0.3
578,635 - EX28DRAFT_0580 0.32 -3.3
578,751 - EX28DRAFT_0580 0.39 +0.3
578,869 + EX28DRAFT_0580 0.47 +0.4
579,099 - EX28DRAFT_0580 0.62 -0.7
579,317 + EX28DRAFT_0580 0.76 -0.4
579,317 + EX28DRAFT_0580 0.76 -0.5
579,329 + EX28DRAFT_0580 0.77 -0.1
579,329 + EX28DRAFT_0580 0.77 +0.0
579,329 + EX28DRAFT_0580 0.77 +0.3
579,330 - EX28DRAFT_0580 0.77 +1.1
579,417 - EX28DRAFT_0580 0.83 -0.4
579,417 - EX28DRAFT_0580 0.83 -0.3
579,434 + EX28DRAFT_0580 0.84 +0.4
579,442 + EX28DRAFT_0580 0.85 +1.6
579,442 + EX28DRAFT_0580 0.85 +1.3
579,442 + EX28DRAFT_0580 0.85 +0.3
579,451 + EX28DRAFT_0580 0.85 +0.6
579,451 + EX28DRAFT_0580 0.85 +0.2
579,451 + EX28DRAFT_0580 0.85 -0.4
579,452 - EX28DRAFT_0580 0.85 +0.3
579,455 + EX28DRAFT_0580 0.85 +0.6
579,455 + EX28DRAFT_0580 0.85 +0.5
579,456 - EX28DRAFT_0580 0.86 -0.0
579,456 - EX28DRAFT_0580 0.86 -0.3
579,456 - EX28DRAFT_0580 0.86 +0.5
579,456 - EX28DRAFT_0580 0.86 -0.1
579,456 - EX28DRAFT_0580 0.86 -0.4
579,481 + EX28DRAFT_0580 0.87 +1.7
579,679 + +0.2
579,679 + -0.9
579,680 - +0.1
579,680 - -0.2
579,712 + +0.1
579,724 - -2.8
579,824 - +0.4
579,828 + -0.4
579,852 + +0.4
579,956 + EX28DRAFT_0581 0.21 +0.3
579,957 - EX28DRAFT_0581 0.21 +0.2
579,957 - EX28DRAFT_0581 0.21 +0.0
579,957 - EX28DRAFT_0581 0.21 +0.5
580,091 - EX28DRAFT_0581 0.36 -0.2
580,096 - EX28DRAFT_0581 0.36 +0.3
580,147 - EX28DRAFT_0581 0.42 -0.1
580,147 - EX28DRAFT_0581 0.42 +0.4
580,147 - EX28DRAFT_0581 0.42 -0.0
580,273 + EX28DRAFT_0581 0.56 -0.1
580,273 + EX28DRAFT_0581 0.56 -0.1
580,273 + EX28DRAFT_0581 0.56 +0.0
580,274 - EX28DRAFT_0581 0.56 +0.5
580,274 - EX28DRAFT_0581 0.56 -1.3
580,274 - EX28DRAFT_0581 0.56 -0.0
580,274 - EX28DRAFT_0581 0.56 +0.1
580,274 - EX28DRAFT_0581 0.56 -0.4
580,351 + EX28DRAFT_0581 0.65 -0.3
580,352 - EX28DRAFT_0581 0.65 -2.0
580,352 - EX28DRAFT_0581 0.65 -0.1
580,352 - EX28DRAFT_0581 0.65 -0.7
580,352 - EX28DRAFT_0581 0.65 -0.3
580,353 + EX28DRAFT_0581 0.65 +0.4
580,354 - EX28DRAFT_0581 0.65 -0.6
580,472 + EX28DRAFT_0581 0.78 -0.6
580,473 - EX28DRAFT_0581 0.78 -0.2
580,615 + -0.1
580,615 + +0.3

Or see this region's nucleotide sequence