Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0532

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0531 and EX28DRAFT_0532 are separated by 192 nucleotidesEX28DRAFT_0532 and EX28DRAFT_0533 are separated by 40 nucleotidesEX28DRAFT_0533 and EX28DRAFT_0534 overlap by 7 nucleotides EX28DRAFT_0531: EX28DRAFT_0531 - Nucleoside-diphosphate-sugar epimerases, at 525,871 to 526,875 _0531 EX28DRAFT_0532: EX28DRAFT_0532 - Chain length determinant protein, at 527,068 to 528,048 _0532 EX28DRAFT_0533: EX28DRAFT_0533 - phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 528,089 to 528,700 _0533 EX28DRAFT_0534: EX28DRAFT_0534 - imidazoleglycerol phosphate synthase, cyclase subunit, at 528,694 to 529,470 _0534 Position (kb) 527 528 529Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 526.103 kb on + strand, within EX28DRAFT_0531at 526.176 kb on + strand, within EX28DRAFT_0531at 526.177 kb on - strand, within EX28DRAFT_0531at 526.195 kb on - strand, within EX28DRAFT_0531at 526.220 kb on + strand, within EX28DRAFT_0531at 526.221 kb on - strand, within EX28DRAFT_0531at 526.248 kb on - strand, within EX28DRAFT_0531at 526.251 kb on + strand, within EX28DRAFT_0531at 526.253 kb on + strand, within EX28DRAFT_0531at 526.290 kb on + strand, within EX28DRAFT_0531at 526.291 kb on - strand, within EX28DRAFT_0531at 526.296 kb on + strand, within EX28DRAFT_0531at 526.331 kb on + strand, within EX28DRAFT_0531at 526.371 kb on - strand, within EX28DRAFT_0531at 526.371 kb on - strand, within EX28DRAFT_0531at 526.383 kb on - strand, within EX28DRAFT_0531at 526.489 kb on + strand, within EX28DRAFT_0531at 526.793 kb on - strandat 526.929 kb on + strandat 526.930 kb on - strandat 526.935 kb on - strandat 526.975 kb on + strandat 526.976 kb on - strandat 526.976 kb on - strandat 527.013 kb on + strandat 527.013 kb on + strandat 527.014 kb on - strandat 527.014 kb on - strandat 527.014 kb on - strandat 527.014 kb on - strandat 527.014 kb on - strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.016 kb on - strandat 527.016 kb on - strandat 527.016 kb on - strandat 527.020 kb on + strandat 527.020 kb on + strandat 527.021 kb on - strandat 527.030 kb on + strandat 527.033 kb on + strandat 527.034 kb on - strandat 527.034 kb on - strandat 527.068 kb on - strandat 527.127 kb on - strandat 527.135 kb on + strandat 527.190 kb on + strand, within EX28DRAFT_0532at 527.213 kb on + strand, within EX28DRAFT_0532at 527.284 kb on + strand, within EX28DRAFT_0532at 527.285 kb on - strand, within EX28DRAFT_0532at 527.285 kb on - strand, within EX28DRAFT_0532at 527.365 kb on - strand, within EX28DRAFT_0532at 527.412 kb on - strand, within EX28DRAFT_0532at 527.424 kb on + strand, within EX28DRAFT_0532at 527.476 kb on - strand, within EX28DRAFT_0532at 527.518 kb on + strand, within EX28DRAFT_0532at 527.518 kb on + strand, within EX28DRAFT_0532at 527.615 kb on + strand, within EX28DRAFT_0532at 527.735 kb on + strand, within EX28DRAFT_0532at 527.735 kb on + strand, within EX28DRAFT_0532at 527.830 kb on + strand, within EX28DRAFT_0532at 527.874 kb on - strand, within EX28DRAFT_0532at 527.874 kb on - strand, within EX28DRAFT_0532at 527.886 kb on + strand, within EX28DRAFT_0532at 527.887 kb on - strand, within EX28DRAFT_0532at 527.896 kb on + strand, within EX28DRAFT_0532at 527.999 kb on + strandat 528.023 kb on + strandat 528.031 kb on + strandat 528.075 kb on + strandat 528.168 kb on + strand, within EX28DRAFT_0533at 528.168 kb on + strand, within EX28DRAFT_0533at 528.212 kb on + strand, within EX28DRAFT_0533at 528.213 kb on - strand, within EX28DRAFT_0533at 528.213 kb on - strand, within EX28DRAFT_0533at 528.265 kb on + strand, within EX28DRAFT_0533at 528.266 kb on - strand, within EX28DRAFT_0533at 528.301 kb on - strand, within EX28DRAFT_0533at 528.301 kb on - strand, within EX28DRAFT_0533at 528.592 kb on + strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.593 kb on - strand, within EX28DRAFT_0533at 528.595 kb on - strand, within EX28DRAFT_0533at 528.731 kb on + strandat 528.750 kb on + strandat 528.751 kb on - strandat 528.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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526,103 + EX28DRAFT_0531 0.23 -0.2
526,176 + EX28DRAFT_0531 0.30 -1.7
526,177 - EX28DRAFT_0531 0.30 -2.5
526,195 - EX28DRAFT_0531 0.32 -2.2
526,220 + EX28DRAFT_0531 0.35 -3.3
526,221 - EX28DRAFT_0531 0.35 -0.9
526,248 - EX28DRAFT_0531 0.38 -3.3
526,251 + EX28DRAFT_0531 0.38 -0.6
526,253 + EX28DRAFT_0531 0.38 -2.2
526,290 + EX28DRAFT_0531 0.42 -4.5
526,291 - EX28DRAFT_0531 0.42 -1.1
526,296 + EX28DRAFT_0531 0.42 -2.0
526,331 + EX28DRAFT_0531 0.46 -2.2
526,371 - EX28DRAFT_0531 0.50 +1.2
526,371 - EX28DRAFT_0531 0.50 -1.8
526,383 - EX28DRAFT_0531 0.51 -1.8
526,489 + EX28DRAFT_0531 0.61 -1.4
526,793 - -4.0
526,929 + -0.2
526,930 - -0.8
526,935 - -0.0
526,975 + -0.5
526,976 - -0.4
526,976 - -0.1
527,013 + +0.8
527,013 + +0.8
527,014 - -0.9
527,014 - +0.9
527,014 - +0.1
527,014 - +0.5
527,014 - -0.4
527,015 + +0.3
527,015 + +0.4
527,015 + +0.1
527,015 + +0.9
527,015 + +0.0
527,015 + +0.0
527,015 + -1.7
527,016 - +0.1
527,016 - +0.4
527,016 - -0.1
527,020 + -0.3
527,020 + -0.0
527,021 - -0.5
527,030 + +0.1
527,033 + +0.6
527,034 - -1.0
527,034 - -0.7
527,068 - +1.2
527,127 - +0.7
527,135 + +0.2
527,190 + EX28DRAFT_0532 0.12 +0.4
527,213 + EX28DRAFT_0532 0.15 -3.1
527,284 + EX28DRAFT_0532 0.22 +0.8
527,285 - EX28DRAFT_0532 0.22 +0.2
527,285 - EX28DRAFT_0532 0.22 +1.1
527,365 - EX28DRAFT_0532 0.30 -0.6
527,412 - EX28DRAFT_0532 0.35 +0.5
527,424 + EX28DRAFT_0532 0.36 -0.3
527,476 - EX28DRAFT_0532 0.42 -0.3
527,518 + EX28DRAFT_0532 0.46 +0.6
527,518 + EX28DRAFT_0532 0.46 +0.3
527,615 + EX28DRAFT_0532 0.56 -0.7
527,735 + EX28DRAFT_0532 0.68 -1.1
527,735 + EX28DRAFT_0532 0.68 +0.3
527,830 + EX28DRAFT_0532 0.78 +0.3
527,874 - EX28DRAFT_0532 0.82 -0.3
527,874 - EX28DRAFT_0532 0.82 -1.0
527,886 + EX28DRAFT_0532 0.83 -0.1
527,887 - EX28DRAFT_0532 0.83 +1.0
527,896 + EX28DRAFT_0532 0.84 -0.0
527,999 + -1.2
528,023 + -0.2
528,031 + -0.3
528,075 + -0.5
528,168 + EX28DRAFT_0533 0.13 +0.5
528,168 + EX28DRAFT_0533 0.13 -1.2
528,212 + EX28DRAFT_0533 0.20 -3.5
528,213 - EX28DRAFT_0533 0.20 -3.0
528,213 - EX28DRAFT_0533 0.20 -2.2
528,265 + EX28DRAFT_0533 0.29 -1.3
528,266 - EX28DRAFT_0533 0.29 -4.0
528,301 - EX28DRAFT_0533 0.35 -1.6
528,301 - EX28DRAFT_0533 0.35 -4.9
528,592 + EX28DRAFT_0533 0.82 -4.3
528,593 - EX28DRAFT_0533 0.82 -0.5
528,593 - EX28DRAFT_0533 0.82 -1.5
528,593 - EX28DRAFT_0533 0.82 +0.1
528,593 - EX28DRAFT_0533 0.82 -1.5
528,593 - EX28DRAFT_0533 0.82 -2.4
528,595 - EX28DRAFT_0533 0.83 -3.5
528,731 + -3.8
528,750 + -4.0
528,751 - -4.9
528,751 - -3.6

Or see this region's nucleotide sequence