Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0508

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0507 and EX28DRAFT_0508 are separated by 84 nucleotidesEX28DRAFT_0508 and EX28DRAFT_0509 are separated by 1 nucleotides EX28DRAFT_0507: EX28DRAFT_0507 - Phosphomannomutase, at 498,809 to 500,179 _0507 EX28DRAFT_0508: EX28DRAFT_0508 - Undecaprenyl-phosphate glucose phosphotransferase, at 500,264 to 501,658 _0508 EX28DRAFT_0509: EX28DRAFT_0509 - Membrane protein involved in the export of O-antigen and teichoic acid, at 501,660 to 503,138 _0509 Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 499.292 kb on + strand, within EX28DRAFT_0507at 499.334 kb on - strand, within EX28DRAFT_0507at 499.387 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.808 kb on + strand, within EX28DRAFT_0507at 500.178 kb on - strandat 500.180 kb on + strandat 500.180 kb on + strandat 500.181 kb on - strandat 500.181 kb on - strandat 500.318 kb on - strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.400 kb on - strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.597 kb on + strand, within EX28DRAFT_0508at 500.597 kb on + strand, within EX28DRAFT_0508at 500.598 kb on - strand, within EX28DRAFT_0508at 500.610 kb on - strand, within EX28DRAFT_0508at 500.688 kb on - strand, within EX28DRAFT_0508at 500.792 kb on + strand, within EX28DRAFT_0508at 500.840 kb on + strand, within EX28DRAFT_0508at 500.851 kb on + strand, within EX28DRAFT_0508at 500.851 kb on + strand, within EX28DRAFT_0508at 500.852 kb on - strand, within EX28DRAFT_0508at 500.888 kb on + strand, within EX28DRAFT_0508at 500.889 kb on - strand, within EX28DRAFT_0508at 500.923 kb on + strand, within EX28DRAFT_0508at 500.986 kb on + strand, within EX28DRAFT_0508at 501.097 kb on + strand, within EX28DRAFT_0508at 501.098 kb on - strand, within EX28DRAFT_0508at 501.098 kb on - strand, within EX28DRAFT_0508at 501.455 kb on + strand, within EX28DRAFT_0508at 501.455 kb on + strand, within EX28DRAFT_0508at 501.456 kb on - strand, within EX28DRAFT_0508at 501.573 kb on - strandat 501.573 kb on - strandat 501.590 kb on - strandat 501.656 kb on + strandat 501.656 kb on + strandat 501.656 kb on + strandat 501.656 kb on + strandat 501.667 kb on + strandat 501.667 kb on + strandat 501.668 kb on - strandat 501.668 kb on - strandat 502.329 kb on + strand, within EX28DRAFT_0509at 502.329 kb on + strand, within EX28DRAFT_0509at 502.329 kb on + strand, within EX28DRAFT_0509at 502.330 kb on - strand, within EX28DRAFT_0509at 502.330 kb on - strand, within EX28DRAFT_0509at 502.408 kb on - strand, within EX28DRAFT_0509at 502.408 kb on - strand, within EX28DRAFT_0509

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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499,292 + EX28DRAFT_0507 0.35 +0.9
499,334 - EX28DRAFT_0507 0.38 -0.2
499,387 + EX28DRAFT_0507 0.42 +0.0
499,601 + EX28DRAFT_0507 0.58 -0.0
499,601 + EX28DRAFT_0507 0.58 -1.4
499,601 + EX28DRAFT_0507 0.58 -0.9
499,601 + EX28DRAFT_0507 0.58 +0.8
499,601 + EX28DRAFT_0507 0.58 -0.2
499,601 + EX28DRAFT_0507 0.58 -0.6
499,602 - EX28DRAFT_0507 0.58 +0.4
499,602 - EX28DRAFT_0507 0.58 -0.4
499,602 - EX28DRAFT_0507 0.58 +0.1
499,808 + EX28DRAFT_0507 0.73 -0.2
500,178 - +2.4
500,180 + -0.1
500,180 + +0.3
500,181 - -0.4
500,181 - -0.3
500,318 - +0.2
500,397 + -3.4
500,397 + +0.3
500,397 + -2.2
500,397 + -0.6
500,397 + -0.2
500,397 + -0.2
500,397 + +1.2
500,398 - +0.2
500,398 - -0.9
500,398 - -0.1
500,398 - +0.3
500,398 - -0.1
500,398 - +2.4
500,398 - +0.1
500,399 + +0.2
500,399 + +0.1
500,399 + -2.3
500,399 + -0.3
500,399 + -0.7
500,400 - +0.1
500,401 + -0.8
500,401 + -0.7
500,401 + -0.9
500,401 + -0.9
500,401 + +0.0
500,401 + -0.0
500,401 + +0.2
500,402 - +0.8
500,402 - +0.6
500,402 - -0.3
500,402 - +1.0
500,402 - +1.9
500,402 - -0.7
500,402 - -0.3
500,402 - -2.0
500,402 - +0.3
500,402 - -0.0
500,402 - -0.5
500,597 + EX28DRAFT_0508 0.24 +0.5
500,597 + EX28DRAFT_0508 0.24 +0.5
500,598 - EX28DRAFT_0508 0.24 -0.2
500,610 - EX28DRAFT_0508 0.25 -0.1
500,688 - EX28DRAFT_0508 0.30 +0.4
500,792 + EX28DRAFT_0508 0.38 -0.0
500,840 + EX28DRAFT_0508 0.41 -0.0
500,851 + EX28DRAFT_0508 0.42 -0.0
500,851 + EX28DRAFT_0508 0.42 +1.1
500,852 - EX28DRAFT_0508 0.42 -0.2
500,888 + EX28DRAFT_0508 0.45 -0.1
500,889 - EX28DRAFT_0508 0.45 +1.1
500,923 + EX28DRAFT_0508 0.47 -0.2
500,986 + EX28DRAFT_0508 0.52 -1.9
501,097 + EX28DRAFT_0508 0.60 -0.9
501,098 - EX28DRAFT_0508 0.60 +0.2
501,098 - EX28DRAFT_0508 0.60 -0.4
501,455 + EX28DRAFT_0508 0.85 +1.0
501,455 + EX28DRAFT_0508 0.85 -0.2
501,456 - EX28DRAFT_0508 0.85 -0.5
501,573 - +0.1
501,573 - -1.8
501,590 - -0.1
501,656 + -0.2
501,656 + +0.2
501,656 + +0.7
501,656 + +0.3
501,667 + +0.4
501,667 + +0.7
501,668 - +0.4
501,668 - +0.5
502,329 + EX28DRAFT_0509 0.45 -0.1
502,329 + EX28DRAFT_0509 0.45 +0.4
502,329 + EX28DRAFT_0509 0.45 -0.4
502,330 - EX28DRAFT_0509 0.45 -0.5
502,330 - EX28DRAFT_0509 0.45 +0.1
502,408 - EX28DRAFT_0509 0.51 -0.1
502,408 - EX28DRAFT_0509 0.51 +0.2

Or see this region's nucleotide sequence