Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0490 and EX28DRAFT_0491 are separated by 109 nucleotides EX28DRAFT_0491 and EX28DRAFT_0492 are separated by 476 nucleotides EX28DRAFT_0492 and EX28DRAFT_0493 are separated by 178 nucleotides
EX28DRAFT_0490: EX28DRAFT_0490 - Uncharacterized protein involved in outer membrane biogenesis, at 480,285 to 482,135
_0490
EX28DRAFT_0491: EX28DRAFT_0491 - Membrane protein TerC, possibly involved in tellurium resistance, at 482,245 to 483,828
_0491
EX28DRAFT_0492: EX28DRAFT_0492 - RNA, at 484,305 to 484,343
_0492
EX28DRAFT_0493: EX28DRAFT_0493 - Periplasmic protein involved in polysaccharide export, at 484,522 to 485,661
_0493
Position (kb) 482
483
484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 481.263 kb on - strand, within EX28DRAFT_0490 at 481.281 kb on + strand, within EX28DRAFT_0490 at 481.281 kb on + strand, within EX28DRAFT_0490 at 481.282 kb on - strand, within EX28DRAFT_0490 at 481.282 kb on - strand, within EX28DRAFT_0490 at 481.283 kb on + strand, within EX28DRAFT_0490 at 481.328 kb on + strand, within EX28DRAFT_0490 at 481.380 kb on - strand, within EX28DRAFT_0490 at 481.516 kb on + strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.543 kb on - strand, within EX28DRAFT_0490 at 481.677 kb on - strand, within EX28DRAFT_0490 at 481.677 kb on - strand, within EX28DRAFT_0490 at 481.736 kb on + strand, within EX28DRAFT_0490 at 481.740 kb on + strand, within EX28DRAFT_0490 at 481.740 kb on + strand, within EX28DRAFT_0490 at 481.741 kb on - strand, within EX28DRAFT_0490 at 481.802 kb on + strand, within EX28DRAFT_0490 at 481.803 kb on - strand, within EX28DRAFT_0490 at 481.815 kb on - strand, within EX28DRAFT_0490 at 481.838 kb on - strand, within EX28DRAFT_0490 at 481.975 kb on + strand at 481.975 kb on + strand at 482.002 kb on - strand at 482.002 kb on - strand at 482.134 kb on - strand at 482.243 kb on - strand at 482.246 kb on + strand at 482.410 kb on - strand, within EX28DRAFT_0491 at 482.418 kb on - strand, within EX28DRAFT_0491 at 482.418 kb on - strand, within EX28DRAFT_0491 at 482.450 kb on + strand, within EX28DRAFT_0491 at 482.475 kb on + strand, within EX28DRAFT_0491 at 482.518 kb on - strand, within EX28DRAFT_0491 at 482.518 kb on - strand, within EX28DRAFT_0491 at 483.059 kb on - strand, within EX28DRAFT_0491 at 483.059 kb on - strand, within EX28DRAFT_0491 at 483.134 kb on - strand, within EX28DRAFT_0491 at 483.205 kb on - strand, within EX28DRAFT_0491 at 483.636 kb on + strand, within EX28DRAFT_0491 at 483.652 kb on + strand, within EX28DRAFT_0491 at 483.652 kb on + strand, within EX28DRAFT_0491 at 483.750 kb on + strand at 483.751 kb on - strand at 483.829 kb on - strand at 483.832 kb on - strand at 483.835 kb on - strand at 483.840 kb on + strand at 483.841 kb on - strand at 483.841 kb on - strand at 483.841 kb on - strand at 483.851 kb on - strand at 483.851 kb on - strand at 483.852 kb on + strand at 483.923 kb on - strand at 483.985 kb on + strand at 484.741 kb on - strand, within EX28DRAFT_0493 at 484.769 kb on - strand, within EX28DRAFT_0493
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 481,263 - EX28DRAFT_0490 0.53 -1.1 481,281 + EX28DRAFT_0490 0.54 -0.1 481,281 + EX28DRAFT_0490 0.54 +0.2 481,282 - EX28DRAFT_0490 0.54 +0.2 481,282 - EX28DRAFT_0490 0.54 +0.7 481,283 + EX28DRAFT_0490 0.54 +0.8 481,328 + EX28DRAFT_0490 0.56 +0.4 481,380 - EX28DRAFT_0490 0.59 +0.0 481,516 + EX28DRAFT_0490 0.67 +0.2 481,539 - EX28DRAFT_0490 0.68 +0.9 481,539 - EX28DRAFT_0490 0.68 -0.2 481,539 - EX28DRAFT_0490 0.68 -2.0 481,543 - EX28DRAFT_0490 0.68 -0.1 481,677 - EX28DRAFT_0490 0.75 -0.9 481,677 - EX28DRAFT_0490 0.75 -0.3 481,736 + EX28DRAFT_0490 0.78 +0.2 481,740 + EX28DRAFT_0490 0.79 -2.3 481,740 + EX28DRAFT_0490 0.79 +0.4 481,741 - EX28DRAFT_0490 0.79 -2.7 481,802 + EX28DRAFT_0490 0.82 +0.1 481,803 - EX28DRAFT_0490 0.82 +0.1 481,815 - EX28DRAFT_0490 0.83 -0.0 481,838 - EX28DRAFT_0490 0.84 +0.0 481,975 + -0.9 481,975 + +1.4 482,002 - +1.0 482,002 - -1.1 482,134 - +2.0 482,243 - -4.3 482,246 + +0.4 482,410 - EX28DRAFT_0491 0.10 +0.5 482,418 - EX28DRAFT_0491 0.11 -1.2 482,418 - EX28DRAFT_0491 0.11 -0.4 482,450 + EX28DRAFT_0491 0.13 -1.7 482,475 + EX28DRAFT_0491 0.15 +1.3 482,518 - EX28DRAFT_0491 0.17 -0.1 482,518 - EX28DRAFT_0491 0.17 +0.5 483,059 - EX28DRAFT_0491 0.51 +2.3 483,059 - EX28DRAFT_0491 0.51 +1.5 483,134 - EX28DRAFT_0491 0.56 -1.0 483,205 - EX28DRAFT_0491 0.61 +0.1 483,636 + EX28DRAFT_0491 0.88 +0.1 483,652 + EX28DRAFT_0491 0.89 -0.7 483,652 + EX28DRAFT_0491 0.89 -0.4 483,750 + -0.2 483,751 - -0.4 483,829 - +0.6 483,832 - +0.3 483,835 - -0.3 483,840 + +0.7 483,841 - +0.3 483,841 - +0.0 483,841 - -0.6 483,851 - -0.9 483,851 - -0.3 483,852 + +0.4 483,923 - -0.8 483,985 + -1.1 484,741 - EX28DRAFT_0493 0.19 -0.8 484,769 - EX28DRAFT_0493 0.22 +0.7
Or see this region's nucleotide sequence