Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0478 and EX28DRAFT_0479 are separated by 168 nucleotides EX28DRAFT_0479 and EX28DRAFT_0480 overlap by 4 nucleotides EX28DRAFT_0480 and EX28DRAFT_0481 overlap by 4 nucleotides
EX28DRAFT_0478: EX28DRAFT_0478 - Collagenase and related proteases, at 460,275 to 461,636
_0478
EX28DRAFT_0479: EX28DRAFT_0479 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 461,805 to 462,527
_0479
EX28DRAFT_0480: EX28DRAFT_0480 - Signal transduction histidine kinase, at 462,524 to 463,927
_0480
EX28DRAFT_0481: EX28DRAFT_0481 - Arabinose efflux permease, at 463,924 to 465,339
_0481
Position (kb) 462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 461.631 kb on - strand at 461.724 kb on + strand at 461.725 kb on - strand at 461.725 kb on - strand at 461.746 kb on - strand at 461.751 kb on + strand at 461.752 kb on - strand at 461.787 kb on - strand at 461.787 kb on - strand at 461.807 kb on - strand at 461.851 kb on + strand at 461.852 kb on - strand at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.342 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.383 kb on - strand, within EX28DRAFT_0479 at 462.439 kb on - strand, within EX28DRAFT_0479 at 462.442 kb on + strand, within EX28DRAFT_0479 at 462.528 kb on - strand at 462.528 kb on - strand at 462.539 kb on + strand at 462.557 kb on + strand at 462.557 kb on + strand at 462.558 kb on - strand at 462.563 kb on + strand at 462.564 kb on - strand at 462.564 kb on - strand at 462.568 kb on + strand at 462.569 kb on - strand at 462.617 kb on - strand at 462.980 kb on - strand, within EX28DRAFT_0480 at 462.980 kb on - strand, within EX28DRAFT_0480 at 463.709 kb on - strand, within EX28DRAFT_0480 at 463.775 kb on + strand, within EX28DRAFT_0480 at 463.803 kb on + strand at 463.811 kb on - strand at 463.880 kb on + strand at 463.881 kb on - strand at 463.950 kb on + strand at 464.033 kb on + strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.037 kb on + strand at 464.037 kb on + strand at 464.037 kb on + strand at 464.038 kb on - strand at 464.038 kb on - strand at 464.039 kb on + strand at 464.040 kb on - strand at 464.093 kb on + strand, within EX28DRAFT_0481 at 464.279 kb on + strand, within EX28DRAFT_0481 at 464.279 kb on + strand, within EX28DRAFT_0481 at 464.552 kb on + strand, within EX28DRAFT_0481 at 464.618 kb on + strand, within EX28DRAFT_0481 at 464.709 kb on + strand, within EX28DRAFT_0481 at 464.776 kb on - strand, within EX28DRAFT_0481 at 464.777 kb on + strand, within EX28DRAFT_0481 at 464.778 kb on - strand, within EX28DRAFT_0481 at 464.862 kb on - strand, within EX28DRAFT_0481
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 461,631 - -0.4 461,724 + -0.1 461,725 - -2.0 461,725 - -0.7 461,746 - +0.8 461,751 + -0.1 461,752 - -0.4 461,787 - +0.5 461,787 - -1.2 461,807 - -1.7 461,851 + +0.4 461,852 - -1.5 462,209 - EX28DRAFT_0479 0.56 +1.2 462,209 - EX28DRAFT_0479 0.56 +0.7 462,209 - EX28DRAFT_0479 0.56 +0.5 462,342 + EX28DRAFT_0479 0.74 +0.7 462,382 + EX28DRAFT_0479 0.80 -0.1 462,382 + EX28DRAFT_0479 0.80 -0.3 462,383 - EX28DRAFT_0479 0.80 -0.3 462,439 - EX28DRAFT_0479 0.88 -0.8 462,442 + EX28DRAFT_0479 0.88 +0.1 462,528 - +0.0 462,528 - +0.6 462,539 + +0.3 462,557 + -0.2 462,557 + -0.2 462,558 - -0.5 462,563 + -1.5 462,564 - +0.8 462,564 - +0.5 462,568 + +1.0 462,569 - -1.5 462,617 - +0.2 462,980 - EX28DRAFT_0480 0.32 -1.1 462,980 - EX28DRAFT_0480 0.32 -0.1 463,709 - EX28DRAFT_0480 0.84 -1.6 463,775 + EX28DRAFT_0480 0.89 +0.6 463,803 + +0.4 463,811 - +0.1 463,880 + -0.1 463,881 - -0.5 463,950 + -1.5 464,033 + +1.0 464,034 - -1.0 464,034 - +0.5 464,034 - +0.3 464,034 - +2.7 464,037 + -0.2 464,037 + +1.0 464,037 + +0.5 464,038 - -0.5 464,038 - -0.8 464,039 + -0.0 464,040 - +0.2 464,093 + EX28DRAFT_0481 0.12 +0.9 464,279 + EX28DRAFT_0481 0.25 -0.2 464,279 + EX28DRAFT_0481 0.25 +0.4 464,552 + EX28DRAFT_0481 0.44 -0.4 464,618 + EX28DRAFT_0481 0.49 +0.4 464,709 + EX28DRAFT_0481 0.55 +0.5 464,776 - EX28DRAFT_0481 0.60 -0.2 464,777 + EX28DRAFT_0481 0.60 -1.0 464,778 - EX28DRAFT_0481 0.60 -0.8 464,862 - EX28DRAFT_0481 0.66 -0.2
Or see this region's nucleotide sequence