Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0474

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0473 and EX28DRAFT_0474 are separated by 250 nucleotidesEX28DRAFT_0474 and EX28DRAFT_0475 are separated by 56 nucleotides EX28DRAFT_0473: EX28DRAFT_0473 - nucleoside transporter, at 455,935 to 457,212 _0473 EX28DRAFT_0474: EX28DRAFT_0474 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 457,463 to 458,515 _0474 EX28DRAFT_0475: EX28DRAFT_0475 - lipid kinase YegS, at 458,572 to 459,471 _0475 Position (kb) 457 458 459Strain fitness (log2 ratio) -3 -2 -1 0 1at 456.527 kb on + strand, within EX28DRAFT_0473at 456.527 kb on + strand, within EX28DRAFT_0473at 456.527 kb on + strand, within EX28DRAFT_0473at 456.528 kb on - strand, within EX28DRAFT_0473at 456.528 kb on - strand, within EX28DRAFT_0473at 456.528 kb on - strand, within EX28DRAFT_0473at 456.531 kb on - strand, within EX28DRAFT_0473at 456.531 kb on - strand, within EX28DRAFT_0473at 456.663 kb on + strand, within EX28DRAFT_0473at 456.663 kb on + strand, within EX28DRAFT_0473at 456.898 kb on - strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.899 kb on + strand, within EX28DRAFT_0473at 456.900 kb on - strand, within EX28DRAFT_0473at 456.900 kb on - strand, within EX28DRAFT_0473at 456.900 kb on - strand, within EX28DRAFT_0473at 456.911 kb on + strand, within EX28DRAFT_0473at 456.912 kb on - strand, within EX28DRAFT_0473at 456.965 kb on + strand, within EX28DRAFT_0473at 457.163 kb on - strandat 457.252 kb on + strandat 457.318 kb on + strandat 457.319 kb on - strandat 457.377 kb on - strandat 457.457 kb on + strandat 457.523 kb on - strandat 457.565 kb on + strandat 457.618 kb on + strand, within EX28DRAFT_0474at 457.632 kb on - strand, within EX28DRAFT_0474at 457.670 kb on - strand, within EX28DRAFT_0474at 457.800 kb on - strand, within EX28DRAFT_0474at 457.879 kb on + strand, within EX28DRAFT_0474at 457.880 kb on - strand, within EX28DRAFT_0474at 457.884 kb on - strand, within EX28DRAFT_0474at 457.967 kb on + strand, within EX28DRAFT_0474at 458.098 kb on - strand, within EX28DRAFT_0474at 458.103 kb on - strand, within EX28DRAFT_0474at 458.109 kb on + strand, within EX28DRAFT_0474at 458.300 kb on + strand, within EX28DRAFT_0474at 458.301 kb on - strand, within EX28DRAFT_0474at 458.323 kb on + strand, within EX28DRAFT_0474at 458.387 kb on - strand, within EX28DRAFT_0474at 458.486 kb on + strandat 458.486 kb on + strandat 458.486 kb on + strandat 458.487 kb on - strandat 458.682 kb on + strand, within EX28DRAFT_0475at 458.731 kb on - strand, within EX28DRAFT_0475at 458.731 kb on - strand, within EX28DRAFT_0475at 458.761 kb on - strand, within EX28DRAFT_0475at 458.761 kb on - strand, within EX28DRAFT_0475at 458.761 kb on - strand, within EX28DRAFT_0475at 458.981 kb on + strand, within EX28DRAFT_0475at 458.982 kb on - strand, within EX28DRAFT_0475at 459.066 kb on + strand, within EX28DRAFT_0475at 459.067 kb on - strand, within EX28DRAFT_0475at 459.067 kb on - strand, within EX28DRAFT_0475at 459.067 kb on - strand, within EX28DRAFT_0475at 459.079 kb on - strand, within EX28DRAFT_0475at 459.079 kb on - strand, within EX28DRAFT_0475at 459.324 kb on + strand, within EX28DRAFT_0475at 459.327 kb on - strand, within EX28DRAFT_0475at 459.327 kb on - strand, within EX28DRAFT_0475at 459.499 kb on + strandat 459.507 kb on + strandat 459.508 kb on - strandat 459.508 kb on - strandat 459.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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456,527 + EX28DRAFT_0473 0.46 -0.3
456,527 + EX28DRAFT_0473 0.46 -0.0
456,527 + EX28DRAFT_0473 0.46 +0.0
456,528 - EX28DRAFT_0473 0.46 +0.5
456,528 - EX28DRAFT_0473 0.46 -0.0
456,528 - EX28DRAFT_0473 0.46 +1.3
456,531 - EX28DRAFT_0473 0.47 -0.3
456,531 - EX28DRAFT_0473 0.47 +0.7
456,663 + EX28DRAFT_0473 0.57 -2.4
456,663 + EX28DRAFT_0473 0.57 +0.3
456,898 - EX28DRAFT_0473 0.75 -0.3
456,899 + EX28DRAFT_0473 0.75 +0.6
456,899 + EX28DRAFT_0473 0.75 -0.6
456,899 + EX28DRAFT_0473 0.75 -0.6
456,899 + EX28DRAFT_0473 0.75 -0.6
456,900 - EX28DRAFT_0473 0.76 +0.4
456,900 - EX28DRAFT_0473 0.76 -0.2
456,900 - EX28DRAFT_0473 0.76 +0.9
456,911 + EX28DRAFT_0473 0.76 -0.2
456,912 - EX28DRAFT_0473 0.76 -0.6
456,965 + EX28DRAFT_0473 0.81 -0.8
457,163 - +0.1
457,252 + +0.3
457,318 + -0.2
457,319 - -0.4
457,377 - +0.2
457,457 + -1.1
457,523 - -1.2
457,565 + +0.0
457,618 + EX28DRAFT_0474 0.15 -0.1
457,632 - EX28DRAFT_0474 0.16 +0.6
457,670 - EX28DRAFT_0474 0.20 -0.4
457,800 - EX28DRAFT_0474 0.32 -0.2
457,879 + EX28DRAFT_0474 0.40 -0.4
457,880 - EX28DRAFT_0474 0.40 -0.5
457,884 - EX28DRAFT_0474 0.40 +0.7
457,967 + EX28DRAFT_0474 0.48 -0.1
458,098 - EX28DRAFT_0474 0.60 +0.4
458,103 - EX28DRAFT_0474 0.61 +0.2
458,109 + EX28DRAFT_0474 0.61 +0.1
458,300 + EX28DRAFT_0474 0.79 +0.7
458,301 - EX28DRAFT_0474 0.80 -0.1
458,323 + EX28DRAFT_0474 0.82 -0.2
458,387 - EX28DRAFT_0474 0.88 +0.3
458,486 + -0.0
458,486 + -0.1
458,486 + -0.1
458,487 - -0.5
458,682 + EX28DRAFT_0475 0.12 +0.4
458,731 - EX28DRAFT_0475 0.18 +0.5
458,731 - EX28DRAFT_0475 0.18 +0.7
458,761 - EX28DRAFT_0475 0.21 -0.7
458,761 - EX28DRAFT_0475 0.21 -0.7
458,761 - EX28DRAFT_0475 0.21 +0.4
458,981 + EX28DRAFT_0475 0.45 +0.9
458,982 - EX28DRAFT_0475 0.46 +0.4
459,066 + EX28DRAFT_0475 0.55 -0.3
459,067 - EX28DRAFT_0475 0.55 +0.2
459,067 - EX28DRAFT_0475 0.55 -2.0
459,067 - EX28DRAFT_0475 0.55 +0.1
459,079 - EX28DRAFT_0475 0.56 -0.1
459,079 - EX28DRAFT_0475 0.56 -3.6
459,324 + EX28DRAFT_0475 0.84 +0.3
459,327 - EX28DRAFT_0475 0.84 +0.4
459,327 - EX28DRAFT_0475 0.84 -0.6
459,499 + +0.5
459,507 + -1.0
459,508 - -0.1
459,508 - -0.0
459,509 + +0.3

Or see this region's nucleotide sequence