Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0459 and EX28DRAFT_0460 are separated by 300 nucleotides EX28DRAFT_0460 and EX28DRAFT_0461 are separated by 136 nucleotides EX28DRAFT_0461 and EX28DRAFT_0462 are separated by 161 nucleotides EX28DRAFT_0462 and EX28DRAFT_0463 are separated by 298 nucleotides
EX28DRAFT_0459: EX28DRAFT_0459 - Superfamily I DNA and RNA helicases, at 443,269 to 445,050
_0459
EX28DRAFT_0460: EX28DRAFT_0460 - hypothetical protein, at 445,351 to 445,593
_0460
EX28DRAFT_0461: EX28DRAFT_0461 - tRNA_anti-like, at 445,730 to 446,512
_0461
EX28DRAFT_0462: EX28DRAFT_0462 - hypothetical protein, at 446,674 to 446,871
_0462
EX28DRAFT_0463: EX28DRAFT_0463 - Site-specific recombinases, DNA invertase Pin homologs, at 447,170 to 447,796
_0463
Position (kb) 445
446
447 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 444.739 kb on + strand, within EX28DRAFT_0459 at 444.740 kb on - strand, within EX28DRAFT_0459 at 444.740 kb on - strand, within EX28DRAFT_0459 at 444.740 kb on - strand, within EX28DRAFT_0459 at 444.740 kb on - strand, within EX28DRAFT_0459 at 444.744 kb on + strand, within EX28DRAFT_0459 at 444.919 kb on + strand at 444.920 kb on - strand at 444.923 kb on + strand at 444.923 kb on + strand at 444.924 kb on - strand at 444.924 kb on - strand at 444.997 kb on + strand at 444.997 kb on + strand at 444.999 kb on + strand at 445.000 kb on - strand at 445.000 kb on - strand at 445.036 kb on + strand at 445.037 kb on - strand at 445.061 kb on + strand at 445.066 kb on + strand at 445.230 kb on - strand at 445.230 kb on - strand at 445.243 kb on - strand at 445.288 kb on - strand at 445.293 kb on + strand at 445.332 kb on + strand at 445.333 kb on - strand at 445.333 kb on - strand at 445.333 kb on - strand at 445.336 kb on + strand at 445.336 kb on + strand at 445.384 kb on - strand, within EX28DRAFT_0460 at 445.384 kb on - strand, within EX28DRAFT_0460 at 445.416 kb on + strand, within EX28DRAFT_0460 at 445.417 kb on - strand, within EX28DRAFT_0460 at 445.424 kb on + strand, within EX28DRAFT_0460 at 445.425 kb on - strand, within EX28DRAFT_0460 at 445.425 kb on - strand, within EX28DRAFT_0460 at 445.428 kb on + strand, within EX28DRAFT_0460 at 445.428 kb on + strand, within EX28DRAFT_0460 at 445.429 kb on - strand, within EX28DRAFT_0460 at 445.431 kb on + strand, within EX28DRAFT_0460 at 445.431 kb on + strand, within EX28DRAFT_0460 at 445.496 kb on - strand, within EX28DRAFT_0460 at 445.541 kb on - strand, within EX28DRAFT_0460 at 445.550 kb on + strand, within EX28DRAFT_0460 at 445.550 kb on + strand, within EX28DRAFT_0460 at 445.551 kb on - strand, within EX28DRAFT_0460 at 445.551 kb on - strand, within EX28DRAFT_0460 at 445.741 kb on + strand at 445.823 kb on + strand, within EX28DRAFT_0461 at 445.835 kb on + strand, within EX28DRAFT_0461 at 445.835 kb on + strand, within EX28DRAFT_0461 at 445.836 kb on - strand, within EX28DRAFT_0461 at 445.836 kb on - strand, within EX28DRAFT_0461 at 445.836 kb on - strand, within EX28DRAFT_0461 at 445.873 kb on - strand, within EX28DRAFT_0461 at 445.965 kb on - strand, within EX28DRAFT_0461 at 445.977 kb on - strand, within EX28DRAFT_0461 at 445.984 kb on + strand, within EX28DRAFT_0461 at 445.985 kb on - strand, within EX28DRAFT_0461 at 445.985 kb on - strand, within EX28DRAFT_0461 at 445.985 kb on - strand, within EX28DRAFT_0461 at 446.207 kb on + strand, within EX28DRAFT_0461 at 446.240 kb on + strand, within EX28DRAFT_0461 at 446.284 kb on + strand, within EX28DRAFT_0461 at 446.285 kb on - strand, within EX28DRAFT_0461 at 446.316 kb on + strand, within EX28DRAFT_0461 at 446.316 kb on + strand, within EX28DRAFT_0461 at 446.317 kb on - strand, within EX28DRAFT_0461 at 446.317 kb on - strand, within EX28DRAFT_0461 at 446.347 kb on + strand, within EX28DRAFT_0461 at 446.500 kb on + strand at 446.500 kb on + strand at 446.506 kb on + strand at 446.552 kb on + strand at 446.597 kb on - strand at 446.604 kb on - strand at 446.647 kb on - strand at 446.695 kb on - strand, within EX28DRAFT_0462 at 446.699 kb on + strand, within EX28DRAFT_0462 at 446.699 kb on + strand, within EX28DRAFT_0462 at 446.700 kb on - strand, within EX28DRAFT_0462 at 446.799 kb on - strand, within EX28DRAFT_0462 at 446.822 kb on - strand, within EX28DRAFT_0462 at 446.837 kb on + strand, within EX28DRAFT_0462 at 446.837 kb on + strand, within EX28DRAFT_0462 at 446.868 kb on - strand at 446.869 kb on + strand at 446.948 kb on + strand at 446.951 kb on + strand at 446.951 kb on + strand at 446.968 kb on - strand at 446.968 kb on - strand at 446.998 kb on + strand at 446.999 kb on - strand at 447.075 kb on + strand at 447.075 kb on + strand at 447.076 kb on - strand at 447.076 kb on - strand at 447.076 kb on - strand at 447.099 kb on + strand at 447.099 kb on + strand at 447.099 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.108 kb on + strand at 447.109 kb on - strand at 447.109 kb on - strand at 447.109 kb on - strand at 447.109 kb on - strand at 447.137 kb on + strand at 447.138 kb on - strand at 447.144 kb on - strand at 447.251 kb on - strand, within EX28DRAFT_0463 at 447.270 kb on + strand, within EX28DRAFT_0463 at 447.278 kb on - strand, within EX28DRAFT_0463 at 447.318 kb on + strand, within EX28DRAFT_0463 at 447.323 kb on - strand, within EX28DRAFT_0463 at 447.379 kb on - strand, within EX28DRAFT_0463 at 447.478 kb on + strand, within EX28DRAFT_0463 at 447.479 kb on - strand, within EX28DRAFT_0463
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 444,739 + EX28DRAFT_0459 0.82 -1.7 444,740 - EX28DRAFT_0459 0.83 -0.4 444,740 - EX28DRAFT_0459 0.83 -1.4 444,740 - EX28DRAFT_0459 0.83 +0.5 444,740 - EX28DRAFT_0459 0.83 +0.1 444,744 + EX28DRAFT_0459 0.83 -1.1 444,919 + +0.3 444,920 - -0.6 444,923 + +0.2 444,923 + +0.3 444,924 - +0.1 444,924 - -0.7 444,997 + -0.1 444,997 + +0.3 444,999 + -0.1 445,000 - -0.3 445,000 - -0.1 445,036 + -1.3 445,037 - -0.7 445,061 + +0.7 445,066 + -0.1 445,230 - +1.3 445,230 - -0.3 445,243 - +1.1 445,288 - +0.3 445,293 + -0.1 445,332 + -1.4 445,333 - +0.4 445,333 - -0.1 445,333 - +1.9 445,336 + -2.2 445,336 + +0.4 445,384 - EX28DRAFT_0460 0.14 -0.2 445,384 - EX28DRAFT_0460 0.14 +1.6 445,416 + EX28DRAFT_0460 0.27 +1.7 445,417 - EX28DRAFT_0460 0.27 +0.1 445,424 + EX28DRAFT_0460 0.30 -0.6 445,425 - EX28DRAFT_0460 0.30 -2.1 445,425 - EX28DRAFT_0460 0.30 -0.6 445,428 + EX28DRAFT_0460 0.32 -0.3 445,428 + EX28DRAFT_0460 0.32 +0.0 445,429 - EX28DRAFT_0460 0.32 -0.3 445,431 + EX28DRAFT_0460 0.33 -0.2 445,431 + EX28DRAFT_0460 0.33 -1.1 445,496 - EX28DRAFT_0460 0.60 -0.1 445,541 - EX28DRAFT_0460 0.78 -0.2 445,550 + EX28DRAFT_0460 0.82 -0.1 445,550 + EX28DRAFT_0460 0.82 -0.2 445,551 - EX28DRAFT_0460 0.82 -1.5 445,551 - EX28DRAFT_0460 0.82 +0.2 445,741 + -0.5 445,823 + EX28DRAFT_0461 0.12 +0.8 445,835 + EX28DRAFT_0461 0.13 -0.1 445,835 + EX28DRAFT_0461 0.13 -3.9 445,836 - EX28DRAFT_0461 0.14 -0.3 445,836 - EX28DRAFT_0461 0.14 -2.2 445,836 - EX28DRAFT_0461 0.14 -0.8 445,873 - EX28DRAFT_0461 0.18 +0.3 445,965 - EX28DRAFT_0461 0.30 +0.1 445,977 - EX28DRAFT_0461 0.32 -0.5 445,984 + EX28DRAFT_0461 0.32 -0.3 445,985 - EX28DRAFT_0461 0.33 +0.7 445,985 - EX28DRAFT_0461 0.33 -0.8 445,985 - EX28DRAFT_0461 0.33 +1.1 446,207 + EX28DRAFT_0461 0.61 -0.4 446,240 + EX28DRAFT_0461 0.65 -0.4 446,284 + EX28DRAFT_0461 0.71 +0.2 446,285 - EX28DRAFT_0461 0.71 -1.5 446,316 + EX28DRAFT_0461 0.75 +0.1 446,316 + EX28DRAFT_0461 0.75 +0.7 446,317 - EX28DRAFT_0461 0.75 -0.7 446,317 - EX28DRAFT_0461 0.75 +4.1 446,347 + EX28DRAFT_0461 0.79 -0.1 446,500 + +0.7 446,500 + +0.5 446,506 + +0.1 446,552 + +0.0 446,597 - -0.1 446,604 - +0.0 446,647 - -0.5 446,695 - EX28DRAFT_0462 0.11 -0.3 446,699 + EX28DRAFT_0462 0.13 -0.0 446,699 + EX28DRAFT_0462 0.13 -1.5 446,700 - EX28DRAFT_0462 0.13 +1.2 446,799 - EX28DRAFT_0462 0.63 -0.4 446,822 - EX28DRAFT_0462 0.75 -0.0 446,837 + EX28DRAFT_0462 0.82 -1.4 446,837 + EX28DRAFT_0462 0.82 -0.8 446,868 - -0.9 446,869 + -0.5 446,948 + +0.3 446,951 + -0.5 446,951 + -0.6 446,968 - +0.3 446,968 - -0.2 446,998 + -0.7 446,999 - +0.1 447,075 + +0.2 447,075 + -0.2 447,076 - +0.0 447,076 - -0.2 447,076 - +0.3 447,099 + -0.2 447,099 + +0.9 447,099 + -0.1 447,108 + +0.5 447,108 + +0.3 447,108 + -3.3 447,108 + +0.1 447,108 + +0.4 447,109 - +0.4 447,109 - +0.7 447,109 - -1.0 447,109 - +1.0 447,137 + +0.5 447,138 - -0.1 447,144 - -0.5 447,251 - EX28DRAFT_0463 0.13 -0.2 447,270 + EX28DRAFT_0463 0.16 -0.2 447,278 - EX28DRAFT_0463 0.17 +0.6 447,318 + EX28DRAFT_0463 0.24 +0.1 447,323 - EX28DRAFT_0463 0.24 +0.4 447,379 - EX28DRAFT_0463 0.33 -2.4 447,478 + EX28DRAFT_0463 0.49 -1.6 447,479 - EX28DRAFT_0463 0.49 +0.3
Or see this region's nucleotide sequence