Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0453 and EX28DRAFT_0454 are separated by 10 nucleotides EX28DRAFT_0454 and EX28DRAFT_0455 are separated by 827 nucleotides
EX28DRAFT_0453: EX28DRAFT_0453 - YadA-like C-terminal region/Collagen triple helix repeat (20 copies), at 436,231 to 437,082
_0453
EX28DRAFT_0454: EX28DRAFT_0454 - hypothetical protein, at 437,093 to 437,314
_0454
EX28DRAFT_0455: EX28DRAFT_0455 - Phage integrase family, at 438,142 to 439,500
_0455
Position (kb) 437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 436.111 kb on + strand at 436.115 kb on + strand at 436.129 kb on - strand at 436.131 kb on - strand at 436.142 kb on + strand at 436.146 kb on + strand at 436.147 kb on - strand at 436.171 kb on - strand at 436.174 kb on - strand at 436.208 kb on + strand at 436.309 kb on - strand at 436.309 kb on - strand at 436.361 kb on + strand, within EX28DRAFT_0453 at 436.361 kb on + strand, within EX28DRAFT_0453 at 436.414 kb on + strand, within EX28DRAFT_0453 at 436.464 kb on + strand, within EX28DRAFT_0453 at 436.467 kb on + strand, within EX28DRAFT_0453 at 436.507 kb on - strand, within EX28DRAFT_0453 at 436.515 kb on + strand, within EX28DRAFT_0453 at 436.529 kb on - strand, within EX28DRAFT_0453 at 436.584 kb on + strand, within EX28DRAFT_0453 at 436.584 kb on + strand, within EX28DRAFT_0453 at 436.597 kb on - strand, within EX28DRAFT_0453 at 436.785 kb on + strand, within EX28DRAFT_0453 at 436.831 kb on + strand, within EX28DRAFT_0453 at 436.831 kb on + strand, within EX28DRAFT_0453 at 436.832 kb on - strand, within EX28DRAFT_0453 at 436.832 kb on - strand, within EX28DRAFT_0453 at 436.900 kb on - strand, within EX28DRAFT_0453 at 436.900 kb on - strand, within EX28DRAFT_0453 at 436.914 kb on + strand, within EX28DRAFT_0453 at 436.984 kb on - strand, within EX28DRAFT_0453 at 437.058 kb on + strand at 437.108 kb on - strand at 437.167 kb on + strand, within EX28DRAFT_0454 at 437.192 kb on - strand, within EX28DRAFT_0454 at 437.203 kb on + strand, within EX28DRAFT_0454 at 437.306 kb on - strand at 437.786 kb on + strand at 437.806 kb on + strand at 437.948 kb on - strand at 438.024 kb on + strand at 438.187 kb on + strand at 438.188 kb on - strand at 438.188 kb on - strand at 438.191 kb on - strand at 438.191 kb on - strand at 438.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 436,111 + +0.2 436,115 + +0.9 436,129 - -0.2 436,131 - -0.1 436,142 + -1.2 436,146 + -3.0 436,147 - -0.5 436,171 - -1.5 436,174 - -0.2 436,208 + +0.1 436,309 - -0.1 436,309 - -0.3 436,361 + EX28DRAFT_0453 0.15 -1.4 436,361 + EX28DRAFT_0453 0.15 +0.2 436,414 + EX28DRAFT_0453 0.21 +0.1 436,464 + EX28DRAFT_0453 0.27 -0.1 436,467 + EX28DRAFT_0453 0.28 +0.8 436,507 - EX28DRAFT_0453 0.32 +0.3 436,515 + EX28DRAFT_0453 0.33 -1.0 436,529 - EX28DRAFT_0453 0.35 +0.1 436,584 + EX28DRAFT_0453 0.41 +0.7 436,584 + EX28DRAFT_0453 0.41 +0.8 436,597 - EX28DRAFT_0453 0.43 +0.0 436,785 + EX28DRAFT_0453 0.65 -0.2 436,831 + EX28DRAFT_0453 0.70 -0.4 436,831 + EX28DRAFT_0453 0.70 -0.3 436,832 - EX28DRAFT_0453 0.71 +0.1 436,832 - EX28DRAFT_0453 0.71 -0.5 436,900 - EX28DRAFT_0453 0.79 -0.3 436,900 - EX28DRAFT_0453 0.79 -0.7 436,914 + EX28DRAFT_0453 0.80 +1.6 436,984 - EX28DRAFT_0453 0.88 +0.9 437,058 + -0.4 437,108 - +0.7 437,167 + EX28DRAFT_0454 0.33 -1.2 437,192 - EX28DRAFT_0454 0.45 -0.0 437,203 + EX28DRAFT_0454 0.50 -0.9 437,306 - -1.3 437,786 + -0.3 437,806 + -0.3 437,948 - -0.7 438,024 + -0.7 438,187 + +0.0 438,188 - +0.1 438,188 - -0.6 438,191 - -0.3 438,191 - -0.1 438,221 - +0.3
Or see this region's nucleotide sequence