Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0448

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0447 and EX28DRAFT_0448 are separated by 18 nucleotidesEX28DRAFT_0448 and EX28DRAFT_0449 are separated by 336 nucleotides EX28DRAFT_0447: EX28DRAFT_0447 - Glutamate decarboxylase and related PLP-dependent proteins, at 428,400 to 429,866 _0447 EX28DRAFT_0448: EX28DRAFT_0448 - 2,4-diaminobutyrate 4-transaminases, at 429,885 to 431,258 _0448 EX28DRAFT_0449: EX28DRAFT_0449 - transcriptional regulator, LacI family, at 431,595 to 432,602 _0449 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 428.890 kb on + strand, within EX28DRAFT_0447at 428.891 kb on - strand, within EX28DRAFT_0447at 429.537 kb on - strand, within EX28DRAFT_0447at 429.751 kb on + strandat 429.751 kb on + strandat 429.752 kb on - strandat 429.815 kb on - strandat 429.815 kb on - strandat 429.869 kb on + strandat 429.870 kb on - strandat 429.877 kb on - strandat 429.912 kb on + strandat 430.305 kb on - strand, within EX28DRAFT_0448at 430.389 kb on - strand, within EX28DRAFT_0448at 430.596 kb on - strand, within EX28DRAFT_0448at 430.637 kb on - strand, within EX28DRAFT_0448at 430.639 kb on + strand, within EX28DRAFT_0448at 430.639 kb on + strand, within EX28DRAFT_0448at 430.639 kb on + strand, within EX28DRAFT_0448at 430.691 kb on - strand, within EX28DRAFT_0448at 430.731 kb on - strand, within EX28DRAFT_0448at 430.907 kb on - strand, within EX28DRAFT_0448at 430.907 kb on - strand, within EX28DRAFT_0448at 430.943 kb on - strand, within EX28DRAFT_0448at 430.970 kb on + strand, within EX28DRAFT_0448at 430.985 kb on + strand, within EX28DRAFT_0448at 430.986 kb on - strand, within EX28DRAFT_0448at 431.007 kb on - strand, within EX28DRAFT_0448at 431.077 kb on - strand, within EX28DRAFT_0448at 431.089 kb on + strand, within EX28DRAFT_0448at 431.090 kb on - strand, within EX28DRAFT_0448at 431.090 kb on - strand, within EX28DRAFT_0448at 431.096 kb on + strand, within EX28DRAFT_0448at 431.132 kb on + strandat 431.161 kb on + strandat 431.204 kb on - strandat 431.229 kb on + strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.271 kb on - strandat 431.351 kb on + strandat 431.380 kb on + strandat 431.454 kb on + strandat 431.565 kb on + strandat 431.597 kb on - strandat 431.675 kb on + strandat 431.676 kb on - strandat 431.676 kb on - strandat 431.676 kb on - strandat 431.679 kb on - strandat 431.765 kb on + strand, within EX28DRAFT_0449at 431.832 kb on + strand, within EX28DRAFT_0449at 431.832 kb on + strand, within EX28DRAFT_0449at 431.832 kb on + strand, within EX28DRAFT_0449at 431.833 kb on - strand, within EX28DRAFT_0449at 431.922 kb on - strand, within EX28DRAFT_0449at 431.929 kb on + strand, within EX28DRAFT_0449at 431.951 kb on + strand, within EX28DRAFT_0449at 431.951 kb on + strand, within EX28DRAFT_0449at 431.952 kb on - strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.954 kb on - strand, within EX28DRAFT_0449at 431.954 kb on - strand, within EX28DRAFT_0449at 432.105 kb on - strand, within EX28DRAFT_0449at 432.107 kb on - strand, within EX28DRAFT_0449at 432.133 kb on + strand, within EX28DRAFT_0449at 432.219 kb on + strand, within EX28DRAFT_0449at 432.219 kb on + strand, within EX28DRAFT_0449at 432.220 kb on - strand, within EX28DRAFT_0449at 432.235 kb on + strand, within EX28DRAFT_0449

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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428,890 + EX28DRAFT_0447 0.33 -0.4
428,891 - EX28DRAFT_0447 0.33 -0.1
429,537 - EX28DRAFT_0447 0.78 -1.3
429,751 + -1.7
429,751 + -2.3
429,752 - -1.0
429,815 - -0.2
429,815 - -2.4
429,869 + -0.3
429,870 - -0.7
429,877 - -1.3
429,912 + +1.9
430,305 - EX28DRAFT_0448 0.31 -0.8
430,389 - EX28DRAFT_0448 0.37 -1.4
430,596 - EX28DRAFT_0448 0.52 -1.1
430,637 - EX28DRAFT_0448 0.55 -1.0
430,639 + EX28DRAFT_0448 0.55 +0.8
430,639 + EX28DRAFT_0448 0.55 -0.7
430,639 + EX28DRAFT_0448 0.55 -0.9
430,691 - EX28DRAFT_0448 0.59 -0.6
430,731 - EX28DRAFT_0448 0.62 +0.2
430,907 - EX28DRAFT_0448 0.74 -1.2
430,907 - EX28DRAFT_0448 0.74 +0.1
430,943 - EX28DRAFT_0448 0.77 -0.8
430,970 + EX28DRAFT_0448 0.79 -1.3
430,985 + EX28DRAFT_0448 0.80 -0.4
430,986 - EX28DRAFT_0448 0.80 -1.0
431,007 - EX28DRAFT_0448 0.82 -0.6
431,077 - EX28DRAFT_0448 0.87 -0.5
431,089 + EX28DRAFT_0448 0.88 -0.5
431,090 - EX28DRAFT_0448 0.88 -0.3
431,090 - EX28DRAFT_0448 0.88 -0.6
431,096 + EX28DRAFT_0448 0.88 +0.1
431,132 + -1.4
431,161 + -0.1
431,204 - -0.9
431,229 + -0.3
431,230 - -1.6
431,230 - -1.2
431,230 - -0.1
431,230 - +0.1
431,230 - -2.8
431,271 - -0.7
431,351 + -0.2
431,380 + -0.3
431,454 + -0.1
431,565 + +0.3
431,597 - +0.1
431,675 + -2.0
431,676 - +0.3
431,676 - +0.4
431,676 - +0.8
431,679 - +0.3
431,765 + EX28DRAFT_0449 0.17 +0.0
431,832 + EX28DRAFT_0449 0.24 -0.5
431,832 + EX28DRAFT_0449 0.24 -0.6
431,832 + EX28DRAFT_0449 0.24 +0.4
431,833 - EX28DRAFT_0449 0.24 -0.3
431,922 - EX28DRAFT_0449 0.32 -0.4
431,929 + EX28DRAFT_0449 0.33 +0.2
431,951 + EX28DRAFT_0449 0.35 +0.2
431,951 + EX28DRAFT_0449 0.35 +1.0
431,952 - EX28DRAFT_0449 0.35 +0.3
431,953 + EX28DRAFT_0449 0.36 +0.2
431,953 + EX28DRAFT_0449 0.36 +0.3
431,953 + EX28DRAFT_0449 0.36 +0.0
431,953 + EX28DRAFT_0449 0.36 +0.5
431,953 + EX28DRAFT_0449 0.36 +0.5
431,953 + EX28DRAFT_0449 0.36 +1.0
431,953 + EX28DRAFT_0449 0.36 +0.9
431,954 - EX28DRAFT_0449 0.36 +0.2
431,954 - EX28DRAFT_0449 0.36 -0.2
432,105 - EX28DRAFT_0449 0.51 -0.7
432,107 - EX28DRAFT_0449 0.51 +0.2
432,133 + EX28DRAFT_0449 0.53 -0.0
432,219 + EX28DRAFT_0449 0.62 +0.2
432,219 + EX28DRAFT_0449 0.62 -0.0
432,220 - EX28DRAFT_0449 0.62 +0.7
432,235 + EX28DRAFT_0449 0.63 +0.3

Or see this region's nucleotide sequence