Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0428 and EX28DRAFT_0429 are separated by 189 nucleotides EX28DRAFT_0429 and EX28DRAFT_0430 are separated by 145 nucleotides
EX28DRAFT_0428: EX28DRAFT_0428 - FAD/FMN-containing dehydrogenases, at 407,108 to 408,856
_0428
EX28DRAFT_0429: EX28DRAFT_0429 - Beta-glucosidase-related glycosidases, at 409,046 to 411,343
_0429
EX28DRAFT_0430: EX28DRAFT_0430 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 411,489 to 412,406
_0430
Position (kb) 409
410
411
412 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 408.174 kb on + strand, within EX28DRAFT_0428 at 408.175 kb on - strand, within EX28DRAFT_0428 at 408.175 kb on - strand, within EX28DRAFT_0428 at 408.483 kb on + strand, within EX28DRAFT_0428 at 408.643 kb on + strand, within EX28DRAFT_0428 at 408.644 kb on - strand, within EX28DRAFT_0428 at 408.892 kb on + strand at 408.893 kb on - strand at 408.909 kb on - strand at 408.928 kb on - strand at 408.928 kb on - strand at 409.037 kb on + strand at 409.038 kb on - strand at 409.066 kb on - strand at 409.120 kb on + strand at 409.576 kb on + strand, within EX28DRAFT_0429 at 409.581 kb on - strand, within EX28DRAFT_0429 at 409.581 kb on - strand, within EX28DRAFT_0429 at 409.581 kb on - strand, within EX28DRAFT_0429 at 409.581 kb on - strand, within EX28DRAFT_0429 at 409.581 kb on - strand, within EX28DRAFT_0429 at 409.584 kb on + strand, within EX28DRAFT_0429 at 409.585 kb on - strand, within EX28DRAFT_0429 at 409.710 kb on - strand, within EX28DRAFT_0429 at 409.751 kb on + strand, within EX28DRAFT_0429 at 409.752 kb on - strand, within EX28DRAFT_0429 at 409.763 kb on + strand, within EX28DRAFT_0429 at 410.012 kb on + strand, within EX28DRAFT_0429 at 410.012 kb on + strand, within EX28DRAFT_0429 at 410.013 kb on - strand, within EX28DRAFT_0429 at 410.015 kb on + strand, within EX28DRAFT_0429 at 410.024 kb on + strand, within EX28DRAFT_0429 at 410.106 kb on - strand, within EX28DRAFT_0429 at 410.133 kb on - strand, within EX28DRAFT_0429 at 410.170 kb on + strand, within EX28DRAFT_0429 at 410.170 kb on + strand, within EX28DRAFT_0429 at 410.171 kb on - strand, within EX28DRAFT_0429 at 410.810 kb on + strand, within EX28DRAFT_0429 at 410.811 kb on - strand, within EX28DRAFT_0429 at 410.811 kb on - strand, within EX28DRAFT_0429 at 410.874 kb on - strand, within EX28DRAFT_0429 at 410.925 kb on - strand, within EX28DRAFT_0429 at 411.113 kb on + strand, within EX28DRAFT_0429 at 411.113 kb on + strand, within EX28DRAFT_0429 at 411.113 kb on + strand, within EX28DRAFT_0429 at 411.260 kb on + strand at 411.260 kb on + strand at 411.387 kb on - strand at 411.395 kb on + strand at 411.431 kb on - strand at 411.431 kb on - strand at 411.431 kb on - strand at 411.431 kb on - strand at 411.431 kb on - strand at 411.436 kb on - strand at 411.615 kb on - strand, within EX28DRAFT_0430 at 411.617 kb on + strand, within EX28DRAFT_0430 at 411.719 kb on + strand, within EX28DRAFT_0430 at 411.719 kb on + strand, within EX28DRAFT_0430 at 411.915 kb on - strand, within EX28DRAFT_0430 at 411.969 kb on - strand, within EX28DRAFT_0430 at 411.969 kb on - strand, within EX28DRAFT_0430 at 412.033 kb on - strand, within EX28DRAFT_0430 at 412.204 kb on + strand, within EX28DRAFT_0430
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 408,174 + EX28DRAFT_0428 0.61 -0.4 408,175 - EX28DRAFT_0428 0.61 +0.5 408,175 - EX28DRAFT_0428 0.61 -1.1 408,483 + EX28DRAFT_0428 0.79 -0.3 408,643 + EX28DRAFT_0428 0.88 +0.1 408,644 - EX28DRAFT_0428 0.88 -0.2 408,892 + -1.3 408,893 - +0.6 408,909 - -0.1 408,928 - +0.3 408,928 - +0.7 409,037 + +0.8 409,038 - +0.2 409,066 - -0.3 409,120 + +0.3 409,576 + EX28DRAFT_0429 0.23 -0.3 409,581 - EX28DRAFT_0429 0.23 +0.1 409,581 - EX28DRAFT_0429 0.23 -1.2 409,581 - EX28DRAFT_0429 0.23 +0.5 409,581 - EX28DRAFT_0429 0.23 -0.1 409,581 - EX28DRAFT_0429 0.23 -0.2 409,584 + EX28DRAFT_0429 0.23 +1.2 409,585 - EX28DRAFT_0429 0.23 +0.1 409,710 - EX28DRAFT_0429 0.29 -0.9 409,751 + EX28DRAFT_0429 0.31 -0.1 409,752 - EX28DRAFT_0429 0.31 -0.5 409,763 + EX28DRAFT_0429 0.31 -0.3 410,012 + EX28DRAFT_0429 0.42 -0.9 410,012 + EX28DRAFT_0429 0.42 -0.3 410,013 - EX28DRAFT_0429 0.42 -0.1 410,015 + EX28DRAFT_0429 0.42 -3.6 410,024 + EX28DRAFT_0429 0.43 +0.7 410,106 - EX28DRAFT_0429 0.46 -4.8 410,133 - EX28DRAFT_0429 0.47 -0.6 410,170 + EX28DRAFT_0429 0.49 +0.2 410,170 + EX28DRAFT_0429 0.49 +2.1 410,171 - EX28DRAFT_0429 0.49 -0.4 410,810 + EX28DRAFT_0429 0.77 +0.2 410,811 - EX28DRAFT_0429 0.77 +0.2 410,811 - EX28DRAFT_0429 0.77 -0.6 410,874 - EX28DRAFT_0429 0.80 -0.2 410,925 - EX28DRAFT_0429 0.82 +0.4 411,113 + EX28DRAFT_0429 0.90 +0.6 411,113 + EX28DRAFT_0429 0.90 -0.6 411,113 + EX28DRAFT_0429 0.90 +0.2 411,260 + +0.5 411,260 + +0.5 411,387 - +0.8 411,395 + +0.1 411,431 - +0.2 411,431 - -0.8 411,431 - +0.3 411,431 - -0.0 411,431 - -0.3 411,436 - +0.6 411,615 - EX28DRAFT_0430 0.14 -0.7 411,617 + EX28DRAFT_0430 0.14 -1.5 411,719 + EX28DRAFT_0430 0.25 +2.1 411,719 + EX28DRAFT_0430 0.25 -0.2 411,915 - EX28DRAFT_0430 0.46 +0.3 411,969 - EX28DRAFT_0430 0.52 +0.4 411,969 - EX28DRAFT_0430 0.52 +0.3 412,033 - EX28DRAFT_0430 0.59 +0.0 412,204 + EX28DRAFT_0430 0.78 +0.5
Or see this region's nucleotide sequence