Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0402 and EX28DRAFT_0403 are separated by 138 nucleotides EX28DRAFT_0403 and EX28DRAFT_0404 are separated by 102 nucleotides EX28DRAFT_0404 and EX28DRAFT_0405 are separated by 19 nucleotides
EX28DRAFT_0402: EX28DRAFT_0402 - S-formylglutathione hydrolase, at 378,841 to 379,668
_0402
EX28DRAFT_0403: EX28DRAFT_0403 - Protein of unknown function (DUF1228), at 379,807 to 380,955
_0403
EX28DRAFT_0404: EX28DRAFT_0404 - GTP cyclohydrolase I, at 381,058 to 381,726
_0404
EX28DRAFT_0405: EX28DRAFT_0405 - Predicted membrane protein, at 381,746 to 382,903
_0405
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 378.885 kb on + strand at 378.902 kb on + strand at 378.902 kb on + strand at 378.903 kb on - strand at 378.903 kb on - strand at 378.906 kb on - strand at 378.906 kb on - strand at 379.319 kb on + strand, within EX28DRAFT_0402 at 379.320 kb on - strand, within EX28DRAFT_0402 at 379.325 kb on + strand, within EX28DRAFT_0402 at 379.325 kb on + strand, within EX28DRAFT_0402 at 379.325 kb on + strand, within EX28DRAFT_0402 at 379.326 kb on - strand, within EX28DRAFT_0402 at 379.326 kb on - strand, within EX28DRAFT_0402 at 379.326 kb on - strand, within EX28DRAFT_0402 at 379.458 kb on + strand, within EX28DRAFT_0402 at 379.700 kb on - strand at 379.708 kb on + strand at 379.709 kb on - strand at 379.709 kb on - strand at 379.712 kb on - strand at 379.712 kb on - strand at 379.712 kb on - strand at 379.736 kb on + strand at 379.819 kb on - strand at 379.819 kb on - strand at 379.878 kb on + strand at 379.918 kb on - strand at 379.954 kb on + strand, within EX28DRAFT_0403 at 379.955 kb on - strand, within EX28DRAFT_0403 at 379.955 kb on - strand, within EX28DRAFT_0403 at 380.251 kb on + strand, within EX28DRAFT_0403 at 380.252 kb on - strand, within EX28DRAFT_0403 at 380.254 kb on - strand, within EX28DRAFT_0403 at 380.319 kb on - strand, within EX28DRAFT_0403 at 380.319 kb on - strand, within EX28DRAFT_0403 at 380.408 kb on + strand, within EX28DRAFT_0403 at 380.428 kb on + strand, within EX28DRAFT_0403 at 380.450 kb on - strand, within EX28DRAFT_0403 at 380.711 kb on + strand, within EX28DRAFT_0403 at 380.711 kb on + strand, within EX28DRAFT_0403 at 380.711 kb on + strand, within EX28DRAFT_0403 at 380.736 kb on - strand, within EX28DRAFT_0403 at 380.736 kb on - strand, within EX28DRAFT_0403 at 380.737 kb on + strand, within EX28DRAFT_0403 at 380.738 kb on - strand, within EX28DRAFT_0403 at 380.770 kb on + strand, within EX28DRAFT_0403 at 380.770 kb on + strand, within EX28DRAFT_0403 at 380.770 kb on + strand, within EX28DRAFT_0403 at 380.771 kb on - strand, within EX28DRAFT_0403 at 380.771 kb on - strand, within EX28DRAFT_0403 at 380.773 kb on - strand, within EX28DRAFT_0403 at 380.954 kb on - strand at 380.954 kb on - strand at 380.957 kb on + strand at 380.958 kb on - strand at 381.808 kb on + strand at 381.809 kb on - strand at 381.811 kb on + strand at 381.812 kb on - strand at 381.922 kb on + strand, within EX28DRAFT_0405
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 378,885 + +0.7 378,902 + +0.3 378,902 + -0.3 378,903 - -0.3 378,903 - +0.1 378,906 - +0.3 378,906 - -1.6 379,319 + EX28DRAFT_0402 0.58 +0.2 379,320 - EX28DRAFT_0402 0.58 +0.2 379,325 + EX28DRAFT_0402 0.58 +0.0 379,325 + EX28DRAFT_0402 0.58 +0.4 379,325 + EX28DRAFT_0402 0.58 -0.2 379,326 - EX28DRAFT_0402 0.59 +0.3 379,326 - EX28DRAFT_0402 0.59 +1.2 379,326 - EX28DRAFT_0402 0.59 -0.9 379,458 + EX28DRAFT_0402 0.75 +0.4 379,700 - +0.1 379,708 + -1.0 379,709 - -0.9 379,709 - -0.1 379,712 - -0.3 379,712 - -2.0 379,712 - -0.2 379,736 + +0.2 379,819 - +0.9 379,819 - -0.0 379,878 + +0.7 379,918 - -0.1 379,954 + EX28DRAFT_0403 0.13 +1.1 379,955 - EX28DRAFT_0403 0.13 -0.2 379,955 - EX28DRAFT_0403 0.13 +2.9 380,251 + EX28DRAFT_0403 0.39 +1.0 380,252 - EX28DRAFT_0403 0.39 +0.1 380,254 - EX28DRAFT_0403 0.39 -0.0 380,319 - EX28DRAFT_0403 0.45 -0.2 380,319 - EX28DRAFT_0403 0.45 +0.7 380,408 + EX28DRAFT_0403 0.52 +0.8 380,428 + EX28DRAFT_0403 0.54 +1.9 380,450 - EX28DRAFT_0403 0.56 +0.3 380,711 + EX28DRAFT_0403 0.79 -0.8 380,711 + EX28DRAFT_0403 0.79 -1.1 380,711 + EX28DRAFT_0403 0.79 +1.0 380,736 - EX28DRAFT_0403 0.81 +0.3 380,736 - EX28DRAFT_0403 0.81 -0.3 380,737 + EX28DRAFT_0403 0.81 +0.1 380,738 - EX28DRAFT_0403 0.81 +0.3 380,770 + EX28DRAFT_0403 0.84 +0.1 380,770 + EX28DRAFT_0403 0.84 +0.5 380,770 + EX28DRAFT_0403 0.84 +0.4 380,771 - EX28DRAFT_0403 0.84 -0.3 380,771 - EX28DRAFT_0403 0.84 -0.1 380,773 - EX28DRAFT_0403 0.84 +0.7 380,954 - +1.5 380,954 - +0.4 380,957 + +0.8 380,958 - +0.4 381,808 + +0.0 381,809 - +0.4 381,811 + +0.1 381,812 - +0.4 381,922 + EX28DRAFT_0405 0.15 -0.1
Or see this region's nucleotide sequence