Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0386 and EX28DRAFT_0387 are separated by 415 nucleotides EX28DRAFT_0387 and EX28DRAFT_0388 are separated by 21 nucleotides
EX28DRAFT_0386: EX28DRAFT_0386 - Cell wall-associated hydrolases (invasion-associated proteins), at 359,780 to 360,349
_0386
EX28DRAFT_0387: EX28DRAFT_0387 - Membrane-associated phospholipid phosphatase, at 360,765 to 361,490
_0387
EX28DRAFT_0388: EX28DRAFT_0388 - Putative GTPases (G3E family), at 361,512 to 362,498
_0388
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 359.779 kb on - strand at 359.779 kb on - strand at 359.781 kb on + strand at 359.782 kb on - strand at 359.796 kb on - strand at 359.880 kb on - strand, within EX28DRAFT_0386 at 359.880 kb on - strand, within EX28DRAFT_0386 at 359.945 kb on + strand, within EX28DRAFT_0386 at 359.946 kb on - strand, within EX28DRAFT_0386 at 360.003 kb on + strand, within EX28DRAFT_0386 at 360.023 kb on + strand, within EX28DRAFT_0386 at 360.047 kb on - strand, within EX28DRAFT_0386 at 360.053 kb on + strand, within EX28DRAFT_0386 at 360.074 kb on - strand, within EX28DRAFT_0386 at 360.127 kb on - strand, within EX28DRAFT_0386 at 360.137 kb on - strand, within EX28DRAFT_0386 at 360.160 kb on + strand, within EX28DRAFT_0386 at 360.161 kb on - strand, within EX28DRAFT_0386 at 360.165 kb on - strand, within EX28DRAFT_0386 at 360.169 kb on + strand, within EX28DRAFT_0386 at 360.266 kb on - strand, within EX28DRAFT_0386 at 360.268 kb on + strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.269 kb on - strand, within EX28DRAFT_0386 at 360.319 kb on + strand at 360.320 kb on - strand at 360.322 kb on - strand at 360.385 kb on + strand at 360.386 kb on - strand at 360.393 kb on + strand at 360.393 kb on + strand at 360.421 kb on + strand at 360.499 kb on - strand at 360.499 kb on - strand at 360.596 kb on + strand at 360.767 kb on - strand at 360.774 kb on + strand at 360.819 kb on + strand at 360.820 kb on - strand at 360.999 kb on - strand, within EX28DRAFT_0387 at 361.096 kb on + strand, within EX28DRAFT_0387 at 361.188 kb on + strand, within EX28DRAFT_0387 at 361.188 kb on + strand, within EX28DRAFT_0387 at 361.305 kb on - strand, within EX28DRAFT_0387 at 361.411 kb on + strand, within EX28DRAFT_0387 at 361.412 kb on - strand, within EX28DRAFT_0387 at 361.412 kb on - strand, within EX28DRAFT_0387 at 361.445 kb on + strand at 361.446 kb on - strand at 361.452 kb on + strand at 361.452 kb on + strand at 361.455 kb on + strand at 361.455 kb on + strand at 361.478 kb on + strand at 361.490 kb on + strand at 361.490 kb on + strand at 361.587 kb on + strand at 361.588 kb on - strand at 361.593 kb on + strand at 361.768 kb on - strand, within EX28DRAFT_0388 at 361.808 kb on + strand, within EX28DRAFT_0388 at 362.170 kb on + strand, within EX28DRAFT_0388 at 362.188 kb on - strand, within EX28DRAFT_0388
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 359,779 - +0.1 359,779 - +0.2 359,781 + -0.7 359,782 - +1.2 359,796 - +0.2 359,880 - EX28DRAFT_0386 0.18 -1.0 359,880 - EX28DRAFT_0386 0.18 +0.3 359,945 + EX28DRAFT_0386 0.29 -1.7 359,946 - EX28DRAFT_0386 0.29 -0.9 360,003 + EX28DRAFT_0386 0.39 +0.7 360,023 + EX28DRAFT_0386 0.43 +0.0 360,047 - EX28DRAFT_0386 0.47 +0.0 360,053 + EX28DRAFT_0386 0.48 -0.4 360,074 - EX28DRAFT_0386 0.52 +0.8 360,127 - EX28DRAFT_0386 0.61 -0.2 360,137 - EX28DRAFT_0386 0.63 +0.6 360,160 + EX28DRAFT_0386 0.67 +0.6 360,161 - EX28DRAFT_0386 0.67 +0.0 360,165 - EX28DRAFT_0386 0.68 +0.7 360,169 + EX28DRAFT_0386 0.68 +2.8 360,266 - EX28DRAFT_0386 0.85 +0.6 360,268 + EX28DRAFT_0386 0.86 -2.7 360,269 - EX28DRAFT_0386 0.86 +1.2 360,269 - EX28DRAFT_0386 0.86 +0.8 360,269 - EX28DRAFT_0386 0.86 +0.1 360,269 - EX28DRAFT_0386 0.86 +0.4 360,269 - EX28DRAFT_0386 0.86 +1.1 360,319 + +0.3 360,320 - -0.0 360,322 - +0.5 360,385 + +0.7 360,386 - -0.0 360,393 + +0.7 360,393 + +0.4 360,421 + +0.0 360,499 - +0.4 360,499 - -0.4 360,596 + -0.4 360,767 - -0.6 360,774 + -1.7 360,819 + +0.1 360,820 - +0.8 360,999 - EX28DRAFT_0387 0.32 +0.2 361,096 + EX28DRAFT_0387 0.46 +0.6 361,188 + EX28DRAFT_0387 0.58 -1.0 361,188 + EX28DRAFT_0387 0.58 +1.4 361,305 - EX28DRAFT_0387 0.74 +0.3 361,411 + EX28DRAFT_0387 0.89 -0.2 361,412 - EX28DRAFT_0387 0.89 +1.1 361,412 - EX28DRAFT_0387 0.89 -0.3 361,445 + -1.5 361,446 - +0.7 361,452 + +0.8 361,452 + +0.6 361,455 + +0.6 361,455 + +0.8 361,478 + -2.9 361,490 + -0.2 361,490 + +0.4 361,587 + +0.8 361,588 - +0.5 361,593 + +0.1 361,768 - EX28DRAFT_0388 0.26 +0.5 361,808 + EX28DRAFT_0388 0.30 -1.0 362,170 + EX28DRAFT_0388 0.67 +0.3 362,188 - EX28DRAFT_0388 0.68 +0.1
Or see this region's nucleotide sequence