Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0339

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0336 and EX28DRAFT_0337 are separated by 71 nucleotidesEX28DRAFT_0337 and EX28DRAFT_0338 are separated by 53 nucleotidesEX28DRAFT_0338 and EX28DRAFT_0339 are separated by 86 nucleotidesEX28DRAFT_0339 and EX28DRAFT_0340 are separated by 88 nucleotides EX28DRAFT_0336: EX28DRAFT_0336 - ribonuclease Z, at 298,720 to 299,637 _0336 EX28DRAFT_0337: EX28DRAFT_0337 - Predicted acyltransferase, at 299,709 to 300,170 _0337 EX28DRAFT_0338: EX28DRAFT_0338 - Uncharacterized conserved protein, at 300,224 to 300,529 _0338 EX28DRAFT_0339: EX28DRAFT_0339 - isochorismate synthase (EC 5.4.4.2), at 300,616 to 301,911 _0339 EX28DRAFT_0340: EX28DRAFT_0340 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 302,000 to 303,670 _0340 Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 299.617 kb on - strandat 299.673 kb on + strandat 299.674 kb on - strandat 299.676 kb on + strandat 299.678 kb on + strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.814 kb on + strand, within EX28DRAFT_0337at 299.859 kb on - strand, within EX28DRAFT_0337at 299.893 kb on - strand, within EX28DRAFT_0337at 300.045 kb on + strand, within EX28DRAFT_0337at 300.046 kb on - strand, within EX28DRAFT_0337at 300.078 kb on + strand, within EX28DRAFT_0337at 300.079 kb on - strand, within EX28DRAFT_0337at 300.143 kb on + strandat 300.188 kb on + strandat 300.189 kb on - strandat 300.206 kb on - strandat 300.208 kb on + strandat 300.208 kb on + strandat 300.209 kb on - strandat 300.209 kb on - strandat 300.224 kb on - strandat 300.297 kb on + strand, within EX28DRAFT_0338at 300.297 kb on + strand, within EX28DRAFT_0338at 300.329 kb on + strand, within EX28DRAFT_0338at 300.329 kb on + strand, within EX28DRAFT_0338at 300.330 kb on - strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.332 kb on - strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.401 kb on - strand, within EX28DRAFT_0338at 300.404 kb on + strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.407 kb on + strand, within EX28DRAFT_0338at 300.431 kb on + strand, within EX28DRAFT_0338at 300.431 kb on + strand, within EX28DRAFT_0338at 300.446 kb on + strand, within EX28DRAFT_0338at 300.446 kb on + strand, within EX28DRAFT_0338at 300.447 kb on - strand, within EX28DRAFT_0338at 300.548 kb on - strandat 300.548 kb on - strandat 300.549 kb on + strandat 300.549 kb on + strandat 300.550 kb on - strandat 300.550 kb on - strandat 300.563 kb on + strandat 300.563 kb on + strandat 300.564 kb on - strandat 300.568 kb on - strandat 300.568 kb on - strandat 300.586 kb on - strandat 300.589 kb on - strandat 300.589 kb on - strandat 300.689 kb on + strandat 300.775 kb on + strand, within EX28DRAFT_0339at 301.071 kb on + strand, within EX28DRAFT_0339at 301.072 kb on - strand, within EX28DRAFT_0339at 301.271 kb on + strand, within EX28DRAFT_0339at 301.279 kb on + strand, within EX28DRAFT_0339at 301.470 kb on + strand, within EX28DRAFT_0339at 301.470 kb on + strand, within EX28DRAFT_0339at 301.488 kb on + strand, within EX28DRAFT_0339at 301.529 kb on + strand, within EX28DRAFT_0339at 301.558 kb on - strand, within EX28DRAFT_0339at 301.632 kb on - strand, within EX28DRAFT_0339at 301.739 kb on + strand, within EX28DRAFT_0339at 301.824 kb on + strandat 301.872 kb on + strandat 301.910 kb on - strandat 301.937 kb on + strandat 301.965 kb on + strandat 301.965 kb on + strandat 301.966 kb on - strandat 301.966 kb on - strandat 301.966 kb on - strandat 301.968 kb on - strandat 302.018 kb on - strandat 302.081 kb on - strandat 302.081 kb on - strandat 302.081 kb on - strandat 302.304 kb on + strand, within EX28DRAFT_0340at 302.425 kb on + strand, within EX28DRAFT_0340at 302.426 kb on - strand, within EX28DRAFT_0340at 302.426 kb on - strand, within EX28DRAFT_0340at 302.495 kb on - strand, within EX28DRAFT_0340at 302.522 kb on + strand, within EX28DRAFT_0340

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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299,617 - -0.4
299,673 + -0.4
299,674 - -1.0
299,676 + +1.6
299,678 + +0.2
299,729 - -0.3
299,729 - -0.1
299,729 - -0.4
299,729 - +1.5
299,814 + EX28DRAFT_0337 0.23 -1.3
299,859 - EX28DRAFT_0337 0.32 -0.2
299,893 - EX28DRAFT_0337 0.40 -0.5
300,045 + EX28DRAFT_0337 0.73 +0.2
300,046 - EX28DRAFT_0337 0.73 -0.7
300,078 + EX28DRAFT_0337 0.80 -0.8
300,079 - EX28DRAFT_0337 0.80 +0.6
300,143 + +0.2
300,188 + -0.5
300,189 - -0.0
300,206 - +0.2
300,208 + +0.0
300,208 + -0.0
300,209 - -0.2
300,209 - -1.2
300,224 - +0.5
300,297 + EX28DRAFT_0338 0.24 +0.6
300,297 + EX28DRAFT_0338 0.24 -0.6
300,329 + EX28DRAFT_0338 0.34 +0.4
300,329 + EX28DRAFT_0338 0.34 -1.4
300,330 - EX28DRAFT_0338 0.35 -0.5
300,331 + EX28DRAFT_0338 0.35 -0.2
300,331 + EX28DRAFT_0338 0.35 +0.3
300,331 + EX28DRAFT_0338 0.35 +1.5
300,332 - EX28DRAFT_0338 0.35 -0.2
300,400 + EX28DRAFT_0338 0.58 +0.2
300,400 + EX28DRAFT_0338 0.58 +0.3
300,400 + EX28DRAFT_0338 0.58 +0.0
300,401 - EX28DRAFT_0338 0.58 +0.0
300,404 + EX28DRAFT_0338 0.59 -0.1
300,405 - EX28DRAFT_0338 0.59 +0.1
300,405 - EX28DRAFT_0338 0.59 -0.8
300,405 - EX28DRAFT_0338 0.59 +0.0
300,407 + EX28DRAFT_0338 0.60 +0.7
300,431 + EX28DRAFT_0338 0.68 -0.1
300,431 + EX28DRAFT_0338 0.68 +0.6
300,446 + EX28DRAFT_0338 0.73 -1.0
300,446 + EX28DRAFT_0338 0.73 +0.1
300,447 - EX28DRAFT_0338 0.73 +0.4
300,548 - -0.4
300,548 - -0.2
300,549 + -0.4
300,549 + +2.1
300,550 - -0.1
300,550 - -0.2
300,563 + -0.6
300,563 + +0.1
300,564 - -0.1
300,568 - +2.0
300,568 - -0.2
300,586 - +0.9
300,589 - -2.2
300,589 - +0.4
300,689 + -1.2
300,775 + EX28DRAFT_0339 0.12 +0.2
301,071 + EX28DRAFT_0339 0.35 -0.7
301,072 - EX28DRAFT_0339 0.35 -0.3
301,271 + EX28DRAFT_0339 0.51 +0.0
301,279 + EX28DRAFT_0339 0.51 -0.0
301,470 + EX28DRAFT_0339 0.66 +0.8
301,470 + EX28DRAFT_0339 0.66 -0.1
301,488 + EX28DRAFT_0339 0.67 +1.1
301,529 + EX28DRAFT_0339 0.70 +0.3
301,558 - EX28DRAFT_0339 0.73 +0.2
301,632 - EX28DRAFT_0339 0.78 +0.7
301,739 + EX28DRAFT_0339 0.87 -0.3
301,824 + -0.1
301,872 + +0.7
301,910 - -1.0
301,937 + -2.2
301,965 + -0.3
301,965 + -0.2
301,966 - +0.1
301,966 - +0.2
301,966 - -0.6
301,968 - +0.3
302,018 - -0.2
302,081 - -0.8
302,081 - -0.1
302,081 - -0.1
302,304 + EX28DRAFT_0340 0.18 +0.1
302,425 + EX28DRAFT_0340 0.25 +1.8
302,426 - EX28DRAFT_0340 0.25 +0.2
302,426 - EX28DRAFT_0340 0.25 -0.7
302,495 - EX28DRAFT_0340 0.30 +0.7
302,522 + EX28DRAFT_0340 0.31 +1.3

Or see this region's nucleotide sequence