Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0306

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0304 and EX28DRAFT_0305 are separated by 55 nucleotidesEX28DRAFT_0305 and EX28DRAFT_0306 are separated by 3 nucleotidesEX28DRAFT_0306 and EX28DRAFT_0307 are separated by 234 nucleotidesEX28DRAFT_0307 and EX28DRAFT_0308 are separated by 80 nucleotides EX28DRAFT_0304: EX28DRAFT_0304 - phosphoesterase, MJ0936 family, at 264,267 to 264,818 _0304 EX28DRAFT_0305: EX28DRAFT_0305 - Isopentenyldiphosphate isomerase, at 264,874 to 265,428 _0305 EX28DRAFT_0306: EX28DRAFT_0306 - transcriptional regulator, LacI family, at 265,432 to 266,451 _0306 EX28DRAFT_0307: EX28DRAFT_0307 - Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type), at 266,686 to 267,129 _0307 EX28DRAFT_0308: EX28DRAFT_0308 - Phosphotransferase system, galactitol-specific IIB component, at 267,210 to 267,482 _0308 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1at 264.644 kb on + strand, within EX28DRAFT_0304at 264.644 kb on + strand, within EX28DRAFT_0304at 264.645 kb on - strand, within EX28DRAFT_0304at 264.645 kb on - strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.709 kb on + strand, within EX28DRAFT_0304at 264.710 kb on - strand, within EX28DRAFT_0304at 264.710 kb on - strand, within EX28DRAFT_0304at 264.713 kb on + strand, within EX28DRAFT_0304at 264.713 kb on + strand, within EX28DRAFT_0304at 264.714 kb on - strand, within EX28DRAFT_0304at 264.735 kb on + strand, within EX28DRAFT_0304at 264.736 kb on - strand, within EX28DRAFT_0304at 264.755 kb on + strand, within EX28DRAFT_0304at 264.755 kb on + strand, within EX28DRAFT_0304at 264.756 kb on - strand, within EX28DRAFT_0304at 264.777 kb on - strandat 264.817 kb on - strandat 264.821 kb on + strandat 264.821 kb on + strandat 264.856 kb on - strandat 264.901 kb on - strandat 264.998 kb on - strand, within EX28DRAFT_0305at 264.998 kb on - strand, within EX28DRAFT_0305at 264.998 kb on - strand, within EX28DRAFT_0305at 265.018 kb on - strand, within EX28DRAFT_0305at 265.154 kb on + strand, within EX28DRAFT_0305at 265.236 kb on + strand, within EX28DRAFT_0305at 265.237 kb on - strand, within EX28DRAFT_0305at 265.800 kb on + strand, within EX28DRAFT_0306at 265.800 kb on + strand, within EX28DRAFT_0306at 265.800 kb on + strand, within EX28DRAFT_0306at 265.800 kb on + strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.801 kb on - strand, within EX28DRAFT_0306at 265.885 kb on - strand, within EX28DRAFT_0306at 265.925 kb on + strand, within EX28DRAFT_0306at 265.925 kb on + strand, within EX28DRAFT_0306at 265.926 kb on - strand, within EX28DRAFT_0306at 265.959 kb on + strand, within EX28DRAFT_0306at 265.960 kb on - strand, within EX28DRAFT_0306at 265.960 kb on - strand, within EX28DRAFT_0306at 266.040 kb on + strand, within EX28DRAFT_0306at 266.040 kb on + strand, within EX28DRAFT_0306at 266.041 kb on - strand, within EX28DRAFT_0306at 266.074 kb on - strand, within EX28DRAFT_0306at 266.164 kb on + strand, within EX28DRAFT_0306at 266.218 kb on - strand, within EX28DRAFT_0306at 266.218 kb on - strand, within EX28DRAFT_0306at 266.283 kb on + strand, within EX28DRAFT_0306at 266.283 kb on + strand, within EX28DRAFT_0306at 266.284 kb on - strand, within EX28DRAFT_0306at 266.285 kb on + strand, within EX28DRAFT_0306at 266.285 kb on + strand, within EX28DRAFT_0306at 266.285 kb on + strand, within EX28DRAFT_0306at 266.324 kb on - strand, within EX28DRAFT_0306at 266.324 kb on - strand, within EX28DRAFT_0306at 266.451 kb on + strandat 266.451 kb on + strandat 266.451 kb on + strandat 266.452 kb on - strandat 266.452 kb on - strandat 266.452 kb on - strandat 266.452 kb on - strandat 266.510 kb on - strandat 266.512 kb on - strandat 266.512 kb on - strandat 266.512 kb on - strandat 266.519 kb on - strandat 266.664 kb on + strandat 266.705 kb on - strandat 266.849 kb on - strand, within EX28DRAFT_0307at 266.851 kb on + strand, within EX28DRAFT_0307at 266.851 kb on + strand, within EX28DRAFT_0307at 266.851 kb on + strand, within EX28DRAFT_0307at 266.852 kb on - strand, within EX28DRAFT_0307at 266.852 kb on - strand, within EX28DRAFT_0307at 266.852 kb on - strand, within EX28DRAFT_0307at 266.928 kb on - strand, within EX28DRAFT_0307at 266.986 kb on - strand, within EX28DRAFT_0307at 266.986 kb on - strand, within EX28DRAFT_0307at 267.013 kb on - strand, within EX28DRAFT_0307at 267.106 kb on - strandat 267.133 kb on - strandat 267.198 kb on - strandat 267.273 kb on - strand, within EX28DRAFT_0308

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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264,644 + EX28DRAFT_0304 0.68 +0.1
264,644 + EX28DRAFT_0304 0.68 -0.0
264,645 - EX28DRAFT_0304 0.68 +0.0
264,645 - EX28DRAFT_0304 0.68 -0.5
264,709 + EX28DRAFT_0304 0.80 -0.2
264,709 + EX28DRAFT_0304 0.80 +0.6
264,709 + EX28DRAFT_0304 0.80 -0.8
264,710 - EX28DRAFT_0304 0.80 +0.8
264,710 - EX28DRAFT_0304 0.80 +0.2
264,713 + EX28DRAFT_0304 0.81 -0.9
264,713 + EX28DRAFT_0304 0.81 +0.1
264,714 - EX28DRAFT_0304 0.81 -0.4
264,735 + EX28DRAFT_0304 0.85 +1.4
264,736 - EX28DRAFT_0304 0.85 -0.0
264,755 + EX28DRAFT_0304 0.88 +0.2
264,755 + EX28DRAFT_0304 0.88 -0.6
264,756 - EX28DRAFT_0304 0.89 -2.0
264,777 - -0.8
264,817 - +0.8
264,821 + -0.6
264,821 + +0.0
264,856 - -0.8
264,901 - +0.1
264,998 - EX28DRAFT_0305 0.22 -0.4
264,998 - EX28DRAFT_0305 0.22 -0.8
264,998 - EX28DRAFT_0305 0.22 -0.2
265,018 - EX28DRAFT_0305 0.26 -1.4
265,154 + EX28DRAFT_0305 0.50 -0.2
265,236 + EX28DRAFT_0305 0.65 -1.3
265,237 - EX28DRAFT_0305 0.65 -2.1
265,800 + EX28DRAFT_0306 0.36 -1.8
265,800 + EX28DRAFT_0306 0.36 +0.3
265,800 + EX28DRAFT_0306 0.36 +0.1
265,800 + EX28DRAFT_0306 0.36 -0.0
265,801 - EX28DRAFT_0306 0.36 -0.2
265,801 - EX28DRAFT_0306 0.36 +0.1
265,801 - EX28DRAFT_0306 0.36 -1.9
265,801 - EX28DRAFT_0306 0.36 -0.5
265,885 - EX28DRAFT_0306 0.44 -0.2
265,925 + EX28DRAFT_0306 0.48 +0.5
265,925 + EX28DRAFT_0306 0.48 +0.4
265,926 - EX28DRAFT_0306 0.48 -0.2
265,959 + EX28DRAFT_0306 0.52 -0.3
265,960 - EX28DRAFT_0306 0.52 -0.5
265,960 - EX28DRAFT_0306 0.52 +0.9
266,040 + EX28DRAFT_0306 0.60 -0.3
266,040 + EX28DRAFT_0306 0.60 -0.6
266,041 - EX28DRAFT_0306 0.60 +0.4
266,074 - EX28DRAFT_0306 0.63 -1.5
266,164 + EX28DRAFT_0306 0.72 +0.1
266,218 - EX28DRAFT_0306 0.77 -0.8
266,218 - EX28DRAFT_0306 0.77 +0.2
266,283 + EX28DRAFT_0306 0.83 -0.5
266,283 + EX28DRAFT_0306 0.83 -0.9
266,284 - EX28DRAFT_0306 0.84 -0.2
266,285 + EX28DRAFT_0306 0.84 -0.2
266,285 + EX28DRAFT_0306 0.84 -0.0
266,285 + EX28DRAFT_0306 0.84 -0.8
266,324 - EX28DRAFT_0306 0.87 -0.2
266,324 - EX28DRAFT_0306 0.87 -0.2
266,451 + -1.6
266,451 + +0.1
266,451 + -2.6
266,452 - +0.7
266,452 - -1.0
266,452 - +0.4
266,452 - -0.2
266,510 - +0.5
266,512 - +0.1
266,512 - -0.1
266,512 - +0.5
266,519 - -0.5
266,664 + +0.6
266,705 - -0.8
266,849 - EX28DRAFT_0307 0.37 -1.2
266,851 + EX28DRAFT_0307 0.37 +0.3
266,851 + EX28DRAFT_0307 0.37 -0.6
266,851 + EX28DRAFT_0307 0.37 -2.0
266,852 - EX28DRAFT_0307 0.37 -0.6
266,852 - EX28DRAFT_0307 0.37 +0.0
266,852 - EX28DRAFT_0307 0.37 -0.3
266,928 - EX28DRAFT_0307 0.55 +0.3
266,986 - EX28DRAFT_0307 0.68 +0.4
266,986 - EX28DRAFT_0307 0.68 -0.8
267,013 - EX28DRAFT_0307 0.74 +0.2
267,106 - +0.2
267,133 - +0.7
267,198 - +1.3
267,273 - EX28DRAFT_0308 0.23 -0.4

Or see this region's nucleotide sequence