Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0301

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0299 and EX28DRAFT_0300 are separated by 44 nucleotidesEX28DRAFT_0300 and EX28DRAFT_0301 are separated by 13 nucleotidesEX28DRAFT_0301 and EX28DRAFT_0302 are separated by 75 nucleotidesEX28DRAFT_0302 and EX28DRAFT_0303 are separated by 140 nucleotides EX28DRAFT_0299: EX28DRAFT_0299 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 260,891 to 261,400 _0299 EX28DRAFT_0300: EX28DRAFT_0300 - TIGR01777 family protein, at 261,445 to 262,338 _0300 EX28DRAFT_0301: EX28DRAFT_0301 - FolB domain, at 262,352 to 262,720 _0301 EX28DRAFT_0302: EX28DRAFT_0302 - Glutathione S-transferase, at 262,796 to 263,425 _0302 EX28DRAFT_0303: EX28DRAFT_0303 - Glutathione S-transferase, at 263,566 to 264,210 _0303 Position (kb) 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 261.438 kb on - strandat 261.443 kb on - strandat 261.443 kb on - strandat 261.454 kb on + strandat 261.454 kb on + strandat 261.476 kb on - strandat 261.476 kb on - strandat 261.545 kb on - strand, within EX28DRAFT_0300at 261.652 kb on - strand, within EX28DRAFT_0300at 261.729 kb on + strand, within EX28DRAFT_0300at 262.088 kb on - strand, within EX28DRAFT_0300at 262.147 kb on - strand, within EX28DRAFT_0300at 262.339 kb on - strandat 262.339 kb on - strandat 262.353 kb on + strandat 262.437 kb on + strand, within EX28DRAFT_0301at 262.437 kb on + strand, within EX28DRAFT_0301at 262.437 kb on + strand, within EX28DRAFT_0301at 262.437 kb on + strand, within EX28DRAFT_0301at 262.438 kb on - strand, within EX28DRAFT_0301at 262.438 kb on - strand, within EX28DRAFT_0301at 262.699 kb on + strandat 262.742 kb on + strandat 262.758 kb on + strandat 262.758 kb on + strandat 262.759 kb on - strandat 262.759 kb on - strandat 262.950 kb on + strand, within EX28DRAFT_0302at 263.005 kb on - strand, within EX28DRAFT_0302at 263.194 kb on - strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.327 kb on + strand, within EX28DRAFT_0302at 263.328 kb on - strand, within EX28DRAFT_0302at 263.328 kb on - strand, within EX28DRAFT_0302at 263.329 kb on + strand, within EX28DRAFT_0302at 263.329 kb on + strand, within EX28DRAFT_0302at 263.330 kb on - strand, within EX28DRAFT_0302at 263.330 kb on - strand, within EX28DRAFT_0302at 263.330 kb on - strand, within EX28DRAFT_0302at 263.387 kb on - strandat 263.387 kb on - strandat 263.471 kb on - strandat 263.473 kb on - strandat 263.473 kb on - strandat 263.473 kb on - strandat 263.473 kb on - strandat 263.527 kb on + strandat 263.527 kb on + strandat 263.527 kb on + strandat 263.529 kb on + strandat 263.529 kb on + strandat 263.529 kb on + strandat 263.529 kb on + strandat 263.530 kb on - strandat 263.530 kb on - strandat 263.530 kb on - strandat 263.555 kb on - strandat 263.566 kb on - strandat 263.617 kb on + strandat 263.617 kb on + strandat 263.618 kb on - strandat 263.622 kb on + strandat 263.622 kb on + strandat 263.623 kb on - strandat 263.630 kb on + strandat 263.630 kb on + strandat 263.630 kb on + strandat 263.630 kb on + strandat 263.631 kb on - strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.632 kb on + strand, within EX28DRAFT_0303at 263.633 kb on - strand, within EX28DRAFT_0303

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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261,438 - +0.7
261,443 - -1.3
261,443 - -0.0
261,454 + -0.4
261,454 + +0.2
261,476 - +0.6
261,476 - +0.1
261,545 - EX28DRAFT_0300 0.11 -0.4
261,652 - EX28DRAFT_0300 0.23 +0.2
261,729 + EX28DRAFT_0300 0.32 +0.2
262,088 - EX28DRAFT_0300 0.72 -0.1
262,147 - EX28DRAFT_0300 0.79 -0.6
262,339 - -1.9
262,339 - +1.3
262,353 + +0.5
262,437 + EX28DRAFT_0301 0.23 +0.1
262,437 + EX28DRAFT_0301 0.23 -1.4
262,437 + EX28DRAFT_0301 0.23 -0.0
262,437 + EX28DRAFT_0301 0.23 -0.1
262,438 - EX28DRAFT_0301 0.23 -0.8
262,438 - EX28DRAFT_0301 0.23 -1.3
262,699 + -0.4
262,742 + -0.1
262,758 + -0.2
262,758 + -0.3
262,759 - +0.1
262,759 - -0.6
262,950 + EX28DRAFT_0302 0.24 +0.1
263,005 - EX28DRAFT_0302 0.33 -0.2
263,194 - EX28DRAFT_0302 0.63 +2.7
263,327 + EX28DRAFT_0302 0.84 +0.6
263,327 + EX28DRAFT_0302 0.84 -1.9
263,327 + EX28DRAFT_0302 0.84 +0.2
263,327 + EX28DRAFT_0302 0.84 -0.0
263,328 - EX28DRAFT_0302 0.84 +0.2
263,328 - EX28DRAFT_0302 0.84 -1.9
263,329 + EX28DRAFT_0302 0.85 -0.3
263,329 + EX28DRAFT_0302 0.85 -0.0
263,330 - EX28DRAFT_0302 0.85 +0.5
263,330 - EX28DRAFT_0302 0.85 +0.4
263,330 - EX28DRAFT_0302 0.85 -0.0
263,387 - +0.0
263,387 - +0.3
263,471 - +0.1
263,473 - +0.7
263,473 - -0.2
263,473 - +0.2
263,473 - -0.2
263,527 + -0.0
263,527 + +0.2
263,527 + +0.4
263,529 + +0.4
263,529 + +0.6
263,529 + +0.3
263,529 + +1.3
263,530 - +0.4
263,530 - -0.8
263,530 - -0.4
263,555 - +0.4
263,566 - -0.3
263,617 + -0.6
263,617 + -0.0
263,618 - -0.9
263,622 + -0.7
263,622 + -0.0
263,623 - -0.2
263,630 + +0.0
263,630 + -0.2
263,630 + -0.1
263,630 + +0.6
263,631 - EX28DRAFT_0303 0.10 -0.6
263,632 + EX28DRAFT_0303 0.10 +0.6
263,632 + EX28DRAFT_0303 0.10 -0.6
263,632 + EX28DRAFT_0303 0.10 -0.1
263,632 + EX28DRAFT_0303 0.10 -0.9
263,633 - EX28DRAFT_0303 0.10 -0.6

Or see this region's nucleotide sequence