Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0298 and EX28DRAFT_0299 are separated by 48 nucleotides EX28DRAFT_0299 and EX28DRAFT_0300 are separated by 44 nucleotides EX28DRAFT_0300 and EX28DRAFT_0301 are separated by 13 nucleotides EX28DRAFT_0301 and EX28DRAFT_0302 are separated by 75 nucleotides
EX28DRAFT_0298: EX28DRAFT_0298 - ABC-type histidine transport system, ATPase component, at 260,069 to 260,842
_0298
EX28DRAFT_0299: EX28DRAFT_0299 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 260,891 to 261,400
_0299
EX28DRAFT_0300: EX28DRAFT_0300 - TIGR01777 family protein, at 261,445 to 262,338
_0300
EX28DRAFT_0301: EX28DRAFT_0301 - FolB domain, at 262,352 to 262,720
_0301
EX28DRAFT_0302: EX28DRAFT_0302 - Glutathione S-transferase, at 262,796 to 263,425
_0302
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 260.472 kb on - strand, within EX28DRAFT_0298 at 260.840 kb on + strand at 260.841 kb on - strand at 261.136 kb on + strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.137 kb on - strand, within EX28DRAFT_0299 at 261.438 kb on - strand at 261.443 kb on - strand at 261.443 kb on - strand at 261.454 kb on + strand at 261.454 kb on + strand at 261.476 kb on - strand at 261.476 kb on - strand at 261.545 kb on - strand, within EX28DRAFT_0300 at 261.652 kb on - strand, within EX28DRAFT_0300 at 261.729 kb on + strand, within EX28DRAFT_0300 at 262.088 kb on - strand, within EX28DRAFT_0300 at 262.147 kb on - strand, within EX28DRAFT_0300 at 262.339 kb on - strand at 262.339 kb on - strand at 262.353 kb on + strand at 262.437 kb on + strand, within EX28DRAFT_0301 at 262.437 kb on + strand, within EX28DRAFT_0301 at 262.437 kb on + strand, within EX28DRAFT_0301 at 262.437 kb on + strand, within EX28DRAFT_0301 at 262.438 kb on - strand, within EX28DRAFT_0301 at 262.438 kb on - strand, within EX28DRAFT_0301 at 262.699 kb on + strand at 262.742 kb on + strand at 262.758 kb on + strand at 262.758 kb on + strand at 262.759 kb on - strand at 262.759 kb on - strand at 262.950 kb on + strand, within EX28DRAFT_0302 at 263.005 kb on - strand, within EX28DRAFT_0302 at 263.194 kb on - strand, within EX28DRAFT_0302 at 263.327 kb on + strand, within EX28DRAFT_0302 at 263.327 kb on + strand, within EX28DRAFT_0302 at 263.327 kb on + strand, within EX28DRAFT_0302 at 263.327 kb on + strand, within EX28DRAFT_0302 at 263.328 kb on - strand, within EX28DRAFT_0302 at 263.328 kb on - strand, within EX28DRAFT_0302 at 263.329 kb on + strand, within EX28DRAFT_0302 at 263.329 kb on + strand, within EX28DRAFT_0302 at 263.330 kb on - strand, within EX28DRAFT_0302 at 263.330 kb on - strand, within EX28DRAFT_0302 at 263.330 kb on - strand, within EX28DRAFT_0302
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 260,472 - EX28DRAFT_0298 0.52 -2.7 260,840 + -0.0 260,841 - -1.1 261,136 + EX28DRAFT_0299 0.48 +0.4 261,137 - EX28DRAFT_0299 0.48 +0.4 261,137 - EX28DRAFT_0299 0.48 +1.0 261,137 - EX28DRAFT_0299 0.48 +0.5 261,137 - EX28DRAFT_0299 0.48 -0.6 261,438 - +0.7 261,443 - -1.3 261,443 - -0.0 261,454 + -0.4 261,454 + +0.2 261,476 - +0.6 261,476 - +0.1 261,545 - EX28DRAFT_0300 0.11 -0.4 261,652 - EX28DRAFT_0300 0.23 +0.2 261,729 + EX28DRAFT_0300 0.32 +0.2 262,088 - EX28DRAFT_0300 0.72 -0.1 262,147 - EX28DRAFT_0300 0.79 -0.6 262,339 - -1.9 262,339 - +1.3 262,353 + +0.5 262,437 + EX28DRAFT_0301 0.23 +0.1 262,437 + EX28DRAFT_0301 0.23 -1.4 262,437 + EX28DRAFT_0301 0.23 -0.0 262,437 + EX28DRAFT_0301 0.23 -0.1 262,438 - EX28DRAFT_0301 0.23 -0.8 262,438 - EX28DRAFT_0301 0.23 -1.3 262,699 + -0.4 262,742 + -0.1 262,758 + -0.2 262,758 + -0.3 262,759 - +0.1 262,759 - -0.6 262,950 + EX28DRAFT_0302 0.24 +0.1 263,005 - EX28DRAFT_0302 0.33 -0.2 263,194 - EX28DRAFT_0302 0.63 +2.7 263,327 + EX28DRAFT_0302 0.84 +0.6 263,327 + EX28DRAFT_0302 0.84 -1.9 263,327 + EX28DRAFT_0302 0.84 +0.2 263,327 + EX28DRAFT_0302 0.84 -0.0 263,328 - EX28DRAFT_0302 0.84 +0.2 263,328 - EX28DRAFT_0302 0.84 -1.9 263,329 + EX28DRAFT_0302 0.85 -0.3 263,329 + EX28DRAFT_0302 0.85 -0.0 263,330 - EX28DRAFT_0302 0.85 +0.5 263,330 - EX28DRAFT_0302 0.85 +0.4 263,330 - EX28DRAFT_0302 0.85 -0.0
Or see this region's nucleotide sequence