Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0294

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0292 and EX28DRAFT_0293 are separated by 89 nucleotidesEX28DRAFT_0293 and EX28DRAFT_0294 are separated by 291 nucleotidesEX28DRAFT_0294 and EX28DRAFT_0295 are separated by 226 nucleotides EX28DRAFT_0292: EX28DRAFT_0292 - amidophosphoribosyltransferase (EC 2.4.2.14), at 254,313 to 255,830 _0292 EX28DRAFT_0293: EX28DRAFT_0293 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 255,920 to 256,489 _0293 EX28DRAFT_0294: EX28DRAFT_0294 - lysine-arginine-ornithine-binding periplasmic protein, at 256,781 to 257,563 _0294 EX28DRAFT_0295: EX28DRAFT_0295 - lysine-arginine-ornithine-binding periplasmic protein, at 257,790 to 258,572 _0295 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1at 255.809 kb on - strandat 256.545 kb on - strandat 256.545 kb on - strandat 256.560 kb on + strandat 256.574 kb on - strandat 256.664 kb on + strandat 256.746 kb on + strandat 256.746 kb on + strandat 256.746 kb on + strandat 256.746 kb on + strandat 256.746 kb on + strandat 256.747 kb on - strandat 256.747 kb on - strandat 256.750 kb on + strandat 256.754 kb on - strandat 256.764 kb on + strandat 256.764 kb on + strandat 256.821 kb on + strandat 256.838 kb on - strandat 256.868 kb on - strand, within EX28DRAFT_0294at 256.887 kb on - strand, within EX28DRAFT_0294at 256.887 kb on - strand, within EX28DRAFT_0294at 257.047 kb on + strand, within EX28DRAFT_0294at 257.285 kb on + strand, within EX28DRAFT_0294at 257.285 kb on + strand, within EX28DRAFT_0294at 257.401 kb on - strand, within EX28DRAFT_0294at 257.509 kb on + strandat 257.510 kb on - strandat 257.513 kb on + strandat 257.514 kb on - strandat 257.514 kb on - strandat 257.514 kb on - strandat 257.534 kb on + strandat 257.535 kb on - strandat 257.550 kb on + strandat 257.562 kb on - strandat 257.636 kb on + strandat 257.655 kb on + strandat 257.667 kb on + strandat 257.667 kb on + strandat 257.699 kb on - strandat 257.733 kb on + strandat 257.733 kb on + strandat 257.734 kb on - strandat 257.895 kb on + strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.896 kb on - strand, within EX28DRAFT_0295at 257.990 kb on + strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.991 kb on - strand, within EX28DRAFT_0295at 257.994 kb on + strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 257.995 kb on - strand, within EX28DRAFT_0295at 258.056 kb on + strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.057 kb on - strand, within EX28DRAFT_0295at 258.290 kb on + strand, within EX28DRAFT_0295at 258.290 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.294 kb on + strand, within EX28DRAFT_0295at 258.295 kb on - strand, within EX28DRAFT_0295at 258.387 kb on + strand, within EX28DRAFT_0295at 258.388 kb on - strand, within EX28DRAFT_0295at 258.407 kb on + strand, within EX28DRAFT_0295at 258.411 kb on - strand, within EX28DRAFT_0295at 258.411 kb on - strand, within EX28DRAFT_0295at 258.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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255,809 - -1.2
256,545 - -1.3
256,545 - +0.2
256,560 + -1.0
256,574 - +0.4
256,664 + +0.7
256,746 + -0.2
256,746 + -1.2
256,746 + -0.3
256,746 + -0.7
256,746 + -1.3
256,747 - +0.2
256,747 - +0.1
256,750 + +0.6
256,754 - +0.8
256,764 + -0.1
256,764 + -0.2
256,821 + -0.9
256,838 - +0.9
256,868 - EX28DRAFT_0294 0.11 -1.8
256,887 - EX28DRAFT_0294 0.14 +0.1
256,887 - EX28DRAFT_0294 0.14 -2.3
257,047 + EX28DRAFT_0294 0.34 -0.1
257,285 + EX28DRAFT_0294 0.64 -1.4
257,285 + EX28DRAFT_0294 0.64 -0.8
257,401 - EX28DRAFT_0294 0.79 -0.2
257,509 + -0.1
257,510 - -0.4
257,513 + -0.3
257,514 - -1.1
257,514 - +0.0
257,514 - +0.5
257,534 + -1.0
257,535 - -0.6
257,550 + -0.8
257,562 - -0.6
257,636 + +0.3
257,655 + +0.3
257,667 + -0.0
257,667 + +0.3
257,699 - -0.8
257,733 + -3.4
257,733 + -1.7
257,734 - +0.5
257,895 + EX28DRAFT_0295 0.13 -0.0
257,896 - EX28DRAFT_0295 0.14 -1.3
257,896 - EX28DRAFT_0295 0.14 -1.3
257,896 - EX28DRAFT_0295 0.14 +0.0
257,990 + EX28DRAFT_0295 0.26 -0.7
257,991 - EX28DRAFT_0295 0.26 -3.4
257,991 - EX28DRAFT_0295 0.26 +0.1
257,991 - EX28DRAFT_0295 0.26 -0.3
257,991 - EX28DRAFT_0295 0.26 -0.0
257,994 + EX28DRAFT_0295 0.26 +0.3
257,995 - EX28DRAFT_0295 0.26 +0.2
257,995 - EX28DRAFT_0295 0.26 +0.5
257,995 - EX28DRAFT_0295 0.26 -0.3
258,056 + EX28DRAFT_0295 0.34 +0.2
258,057 - EX28DRAFT_0295 0.34 +1.0
258,057 - EX28DRAFT_0295 0.34 -1.5
258,057 - EX28DRAFT_0295 0.34 -0.5
258,057 - EX28DRAFT_0295 0.34 -0.7
258,290 + EX28DRAFT_0295 0.64 -0.1
258,290 + EX28DRAFT_0295 0.64 +0.3
258,294 + EX28DRAFT_0295 0.64 -0.0
258,294 + EX28DRAFT_0295 0.64 +0.4
258,294 + EX28DRAFT_0295 0.64 +1.0
258,295 - EX28DRAFT_0295 0.64 -0.9
258,387 + EX28DRAFT_0295 0.76 +0.0
258,388 - EX28DRAFT_0295 0.76 -0.0
258,407 + EX28DRAFT_0295 0.79 -0.3
258,411 - EX28DRAFT_0295 0.79 -0.6
258,411 - EX28DRAFT_0295 0.79 +1.7
258,522 + -1.3

Or see this region's nucleotide sequence