Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0277 and EX28DRAFT_0278 overlap by 1 nucleotides EX28DRAFT_0278 and EX28DRAFT_0279 are separated by 13 nucleotides EX28DRAFT_0279 and EX28DRAFT_0280 are separated by 57 nucleotides EX28DRAFT_0280 and EX28DRAFT_0281 are separated by 158 nucleotides
EX28DRAFT_0277: EX28DRAFT_0277 - Predicted permeases, at 239,096 to 239,905
_0277
EX28DRAFT_0278: EX28DRAFT_0278 - Uncharacterized protein conserved in bacteria, at 239,905 to 240,450
_0278
EX28DRAFT_0279: EX28DRAFT_0279 - YfcL protein, at 240,464 to 240,742
_0279
EX28DRAFT_0280: EX28DRAFT_0280 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain, at 240,800 to 242,797
_0280
EX28DRAFT_0281: EX28DRAFT_0281 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 242,956 to 244,173
_0281
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 239.806 kb on + strand, within EX28DRAFT_0277 at 239.903 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.924 kb on - strand at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.036 kb on + strand, within EX28DRAFT_0278 at 240.065 kb on - strand, within EX28DRAFT_0278 at 240.394 kb on + strand, within EX28DRAFT_0278 at 240.395 kb on - strand, within EX28DRAFT_0278 at 240.395 kb on - strand, within EX28DRAFT_0278 at 240.398 kb on - strand at 240.448 kb on + strand at 240.740 kb on + strand at 240.741 kb on - strand at 240.970 kb on + strand at 240.970 kb on + strand at 240.970 kb on + strand at 240.972 kb on + strand at 240.972 kb on + strand at 240.972 kb on + strand at 240.973 kb on - strand at 240.973 kb on - strand at 240.973 kb on - strand at 241.033 kb on - strand, within EX28DRAFT_0280 at 241.240 kb on - strand, within EX28DRAFT_0280 at 241.285 kb on + strand, within EX28DRAFT_0280 at 241.285 kb on + strand, within EX28DRAFT_0280 at 241.286 kb on - strand, within EX28DRAFT_0280 at 241.299 kb on + strand, within EX28DRAFT_0280 at 241.345 kb on + strand, within EX28DRAFT_0280 at 241.352 kb on + strand, within EX28DRAFT_0280 at 241.353 kb on - strand, within EX28DRAFT_0280 at 241.353 kb on - strand, within EX28DRAFT_0280 at 241.515 kb on + strand, within EX28DRAFT_0280 at 241.789 kb on - strand, within EX28DRAFT_0280 at 242.174 kb on - strand, within EX28DRAFT_0280 at 242.343 kb on - strand, within EX28DRAFT_0280 at 242.513 kb on + strand, within EX28DRAFT_0280 at 242.513 kb on + strand, within EX28DRAFT_0280 at 242.679 kb on + strand at 242.679 kb on + strand at 242.707 kb on + strand at 242.715 kb on + strand at 242.746 kb on + strand at 242.746 kb on + strand at 242.780 kb on + strand at 242.780 kb on + strand at 242.781 kb on - strand at 242.783 kb on - strand at 242.799 kb on + strand at 242.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 239,806 + EX28DRAFT_0277 0.88 +1.0 239,903 + -0.6 239,913 + +0.2 239,913 + +1.4 239,913 + -0.1 239,924 - +0.2 240,007 + EX28DRAFT_0278 0.19 +0.0 240,007 + EX28DRAFT_0278 0.19 -0.8 240,034 + EX28DRAFT_0278 0.24 +0.1 240,034 + EX28DRAFT_0278 0.24 -1.3 240,034 + EX28DRAFT_0278 0.24 +0.0 240,036 + EX28DRAFT_0278 0.24 +0.1 240,065 - EX28DRAFT_0278 0.29 -0.9 240,394 + EX28DRAFT_0278 0.90 -0.2 240,395 - EX28DRAFT_0278 0.90 +0.4 240,395 - EX28DRAFT_0278 0.90 -0.5 240,398 - -0.0 240,448 + -0.4 240,740 + -0.4 240,741 - +1.6 240,970 + +0.1 240,970 + +0.1 240,970 + -0.2 240,972 + +0.5 240,972 + -0.2 240,972 + -0.3 240,973 - +1.0 240,973 - +3.6 240,973 - +0.7 241,033 - EX28DRAFT_0280 0.12 +0.1 241,240 - EX28DRAFT_0280 0.22 +0.8 241,285 + EX28DRAFT_0280 0.24 -0.2 241,285 + EX28DRAFT_0280 0.24 +0.5 241,286 - EX28DRAFT_0280 0.24 +0.4 241,299 + EX28DRAFT_0280 0.25 +0.5 241,345 + EX28DRAFT_0280 0.27 -0.1 241,352 + EX28DRAFT_0280 0.28 -1.5 241,353 - EX28DRAFT_0280 0.28 -0.0 241,353 - EX28DRAFT_0280 0.28 +0.9 241,515 + EX28DRAFT_0280 0.36 +0.2 241,789 - EX28DRAFT_0280 0.49 -1.0 242,174 - EX28DRAFT_0280 0.69 +0.6 242,343 - EX28DRAFT_0280 0.77 -0.4 242,513 + EX28DRAFT_0280 0.86 -0.3 242,513 + EX28DRAFT_0280 0.86 -0.1 242,679 + +0.2 242,679 + +1.0 242,707 + -0.2 242,715 + +0.0 242,746 + -0.6 242,746 + -2.2 242,780 + -0.4 242,780 + -0.3 242,781 - +1.0 242,783 - +0.4 242,799 + -0.6 242,800 - -0.1
Or see this region's nucleotide sequence