Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0270 and EX28DRAFT_0271 overlap by 1 nucleotides EX28DRAFT_0271 and EX28DRAFT_0272 are separated by 224 nucleotides EX28DRAFT_0272 and EX28DRAFT_0273 are separated by 46 nucleotides
EX28DRAFT_0270: EX28DRAFT_0270 - fatty oxidation complex, beta subunit FadI, at 231,295 to 232,605
_0270
EX28DRAFT_0271: EX28DRAFT_0271 - fatty oxidation complex, alpha subunit FadJ, at 232,605 to 234,752
_0271
EX28DRAFT_0272: EX28DRAFT_0272 - phosphohistidine phosphatase, SixA, at 234,977 to 235,447
_0272
EX28DRAFT_0273: EX28DRAFT_0273 - Uncharacterized protein conserved in bacteria, at 235,494 to 236,045
_0273
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 231.738 kb on + strand, within EX28DRAFT_0270 at 231.806 kb on + strand, within EX28DRAFT_0270 at 231.807 kb on - strand, within EX28DRAFT_0270 at 231.982 kb on + strand, within EX28DRAFT_0270 at 231.982 kb on + strand, within EX28DRAFT_0270 at 231.984 kb on + strand, within EX28DRAFT_0270 at 231.984 kb on + strand, within EX28DRAFT_0270 at 232.017 kb on + strand, within EX28DRAFT_0270 at 232.018 kb on - strand, within EX28DRAFT_0270 at 232.018 kb on - strand, within EX28DRAFT_0270 at 232.196 kb on + strand, within EX28DRAFT_0270 at 232.197 kb on - strand, within EX28DRAFT_0270 at 232.197 kb on - strand, within EX28DRAFT_0270 at 232.204 kb on + strand, within EX28DRAFT_0270 at 232.205 kb on - strand, within EX28DRAFT_0270 at 232.205 kb on - strand, within EX28DRAFT_0270 at 232.205 kb on - strand, within EX28DRAFT_0270 at 232.205 kb on - strand, within EX28DRAFT_0270 at 232.245 kb on - strand, within EX28DRAFT_0270 at 232.317 kb on + strand, within EX28DRAFT_0270 at 232.317 kb on + strand, within EX28DRAFT_0270 at 232.355 kb on + strand, within EX28DRAFT_0270 at 232.431 kb on + strand, within EX28DRAFT_0270 at 232.511 kb on + strand at 232.512 kb on - strand at 232.626 kb on - strand at 232.630 kb on + strand at 232.776 kb on - strand at 232.776 kb on - strand at 232.801 kb on + strand at 232.820 kb on + strand, within EX28DRAFT_0271 at 232.820 kb on + strand, within EX28DRAFT_0271 at 232.821 kb on - strand, within EX28DRAFT_0271 at 233.111 kb on - strand, within EX28DRAFT_0271 at 233.582 kb on + strand, within EX28DRAFT_0271 at 233.608 kb on + strand, within EX28DRAFT_0271 at 233.625 kb on - strand, within EX28DRAFT_0271 at 233.625 kb on - strand, within EX28DRAFT_0271 at 233.656 kb on - strand, within EX28DRAFT_0271 at 233.717 kb on + strand, within EX28DRAFT_0271 at 233.718 kb on - strand, within EX28DRAFT_0271 at 233.873 kb on + strand, within EX28DRAFT_0271 at 233.982 kb on - strand, within EX28DRAFT_0271 at 234.084 kb on + strand, within EX28DRAFT_0271 at 234.084 kb on + strand, within EX28DRAFT_0271 at 234.084 kb on + strand, within EX28DRAFT_0271 at 234.109 kb on - strand, within EX28DRAFT_0271 at 234.109 kb on - strand, within EX28DRAFT_0271 at 234.109 kb on - strand, within EX28DRAFT_0271 at 234.246 kb on - strand, within EX28DRAFT_0271 at 234.406 kb on + strand, within EX28DRAFT_0271 at 234.407 kb on - strand, within EX28DRAFT_0271 at 234.409 kb on - strand, within EX28DRAFT_0271 at 234.507 kb on - strand, within EX28DRAFT_0271 at 234.576 kb on + strand at 234.632 kb on + strand at 234.671 kb on + strand at 234.688 kb on + strand at 234.805 kb on - strand at 234.819 kb on + strand at 234.819 kb on + strand at 234.821 kb on + strand at 234.825 kb on + strand at 234.905 kb on + strand at 234.973 kb on + strand at 235.021 kb on - strand at 235.159 kb on + strand, within EX28DRAFT_0272 at 235.233 kb on - strand, within EX28DRAFT_0272 at 235.562 kb on - strand, within EX28DRAFT_0273 at 235.631 kb on + strand, within EX28DRAFT_0273 at 235.637 kb on + strand, within EX28DRAFT_0273
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 231,738 + EX28DRAFT_0270 0.34 +0.1 231,806 + EX28DRAFT_0270 0.39 +2.9 231,807 - EX28DRAFT_0270 0.39 -0.5 231,982 + EX28DRAFT_0270 0.52 -2.2 231,982 + EX28DRAFT_0270 0.52 +1.5 231,984 + EX28DRAFT_0270 0.53 +1.1 231,984 + EX28DRAFT_0270 0.53 -0.3 232,017 + EX28DRAFT_0270 0.55 +0.4 232,018 - EX28DRAFT_0270 0.55 +0.1 232,018 - EX28DRAFT_0270 0.55 -0.9 232,196 + EX28DRAFT_0270 0.69 -1.4 232,197 - EX28DRAFT_0270 0.69 +0.4 232,197 - EX28DRAFT_0270 0.69 +0.2 232,204 + EX28DRAFT_0270 0.69 +0.4 232,205 - EX28DRAFT_0270 0.69 +0.2 232,205 - EX28DRAFT_0270 0.69 +0.1 232,205 - EX28DRAFT_0270 0.69 -0.3 232,205 - EX28DRAFT_0270 0.69 +0.8 232,245 - EX28DRAFT_0270 0.72 +2.2 232,317 + EX28DRAFT_0270 0.78 -0.7 232,317 + EX28DRAFT_0270 0.78 -2.0 232,355 + EX28DRAFT_0270 0.81 +1.4 232,431 + EX28DRAFT_0270 0.87 +0.2 232,511 + +0.8 232,512 - +0.7 232,626 - +0.5 232,630 + +0.3 232,776 - +1.0 232,776 - +0.6 232,801 + +0.3 232,820 + EX28DRAFT_0271 0.10 -0.5 232,820 + EX28DRAFT_0271 0.10 +0.5 232,821 - EX28DRAFT_0271 0.10 +2.1 233,111 - EX28DRAFT_0271 0.24 +0.6 233,582 + EX28DRAFT_0271 0.45 +0.3 233,608 + EX28DRAFT_0271 0.47 +0.7 233,625 - EX28DRAFT_0271 0.47 +1.4 233,625 - EX28DRAFT_0271 0.47 +0.3 233,656 - EX28DRAFT_0271 0.49 +0.6 233,717 + EX28DRAFT_0271 0.52 +0.5 233,718 - EX28DRAFT_0271 0.52 +0.2 233,873 + EX28DRAFT_0271 0.59 +0.6 233,982 - EX28DRAFT_0271 0.64 -0.6 234,084 + EX28DRAFT_0271 0.69 +0.5 234,084 + EX28DRAFT_0271 0.69 -0.1 234,084 + EX28DRAFT_0271 0.69 +0.4 234,109 - EX28DRAFT_0271 0.70 -0.8 234,109 - EX28DRAFT_0271 0.70 +0.8 234,109 - EX28DRAFT_0271 0.70 +0.7 234,246 - EX28DRAFT_0271 0.76 +0.4 234,406 + EX28DRAFT_0271 0.84 +0.4 234,407 - EX28DRAFT_0271 0.84 +2.6 234,409 - EX28DRAFT_0271 0.84 +0.5 234,507 - EX28DRAFT_0271 0.89 -0.2 234,576 + +0.5 234,632 + +0.8 234,671 + +0.7 234,688 + -0.5 234,805 - -2.1 234,819 + +0.3 234,819 + -0.5 234,821 + -0.6 234,825 + -0.8 234,905 + -0.2 234,973 + -1.4 235,021 - -2.0 235,159 + EX28DRAFT_0272 0.39 -3.4 235,233 - EX28DRAFT_0272 0.54 -0.5 235,562 - EX28DRAFT_0273 0.12 +0.4 235,631 + EX28DRAFT_0273 0.25 -0.1 235,637 + EX28DRAFT_0273 0.26 -1.3
Or see this region's nucleotide sequence