Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0262

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0260 and EX28DRAFT_0261 overlap by 23 nucleotidesEX28DRAFT_0261 and EX28DRAFT_0262 overlap by 1 nucleotidesEX28DRAFT_0262 and EX28DRAFT_0263 are separated by 14 nucleotidesEX28DRAFT_0263 and EX28DRAFT_0264 are separated by 123 nucleotides EX28DRAFT_0260: EX28DRAFT_0260 - type VI secretion protein, VC_A0111 family, at 222,818 to 223,903 _0260 EX28DRAFT_0261: EX28DRAFT_0261 - type VI secretion lipoprotein, VC_A0113 family, at 223,881 to 224,426 _0261 EX28DRAFT_0262: EX28DRAFT_0262 - type VI secretion system lysozyme-like protein, at 224,426 to 224,881 _0262 EX28DRAFT_0263: EX28DRAFT_0263 - hypothetical protein, at 224,896 to 225,345 _0263 EX28DRAFT_0264: EX28DRAFT_0264 - ImpA-related N-terminal/ImpA domain protein, at 225,469 to 226,800 _0264 Position (kb) 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 223.528 kb on + strand, within EX28DRAFT_0260at 223.634 kb on + strand, within EX28DRAFT_0260at 223.635 kb on - strand, within EX28DRAFT_0260at 223.635 kb on - strand, within EX28DRAFT_0260at 223.664 kb on + strand, within EX28DRAFT_0260at 223.692 kb on + strand, within EX28DRAFT_0260at 223.820 kb on - strandat 223.839 kb on - strandat 223.898 kb on - strandat 223.938 kb on - strand, within EX28DRAFT_0261at 224.078 kb on + strand, within EX28DRAFT_0261at 224.152 kb on - strand, within EX28DRAFT_0261at 224.249 kb on + strand, within EX28DRAFT_0261at 224.440 kb on + strandat 224.440 kb on + strandat 224.441 kb on - strandat 224.441 kb on - strandat 224.441 kb on - strandat 224.441 kb on - strandat 224.497 kb on + strand, within EX28DRAFT_0262at 224.545 kb on + strand, within EX28DRAFT_0262at 224.709 kb on + strand, within EX28DRAFT_0262at 224.710 kb on - strand, within EX28DRAFT_0262at 224.754 kb on - strand, within EX28DRAFT_0262at 224.809 kb on + strand, within EX28DRAFT_0262at 224.875 kb on + strandat 224.875 kb on + strandat 224.878 kb on - strandat 224.880 kb on - strandat 224.880 kb on - strandat 224.889 kb on + strandat 224.961 kb on + strand, within EX28DRAFT_0263at 225.073 kb on + strand, within EX28DRAFT_0263at 225.073 kb on + strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.112 kb on - strand, within EX28DRAFT_0263at 225.112 kb on - strand, within EX28DRAFT_0263at 225.156 kb on + strand, within EX28DRAFT_0263at 225.266 kb on + strand, within EX28DRAFT_0263at 225.267 kb on - strand, within EX28DRAFT_0263at 225.295 kb on - strand, within EX28DRAFT_0263at 225.299 kb on + strand, within EX28DRAFT_0263at 225.299 kb on + strand, within EX28DRAFT_0263at 225.300 kb on - strand, within EX28DRAFT_0263at 225.318 kb on - strandat 225.318 kb on - strandat 225.370 kb on - strandat 225.370 kb on - strandat 225.384 kb on + strandat 225.384 kb on + strandat 225.388 kb on - strandat 225.419 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.482 kb on + strandat 225.482 kb on + strandat 225.482 kb on + strandat 225.482 kb on + strandat 225.511 kb on - strandat 225.555 kb on + strandat 225.555 kb on + strandat 225.555 kb on + strandat 225.556 kb on - strandat 225.556 kb on - strandat 225.556 kb on - strandat 225.589 kb on + strandat 225.656 kb on - strand, within EX28DRAFT_0264at 225.823 kb on - strand, within EX28DRAFT_0264at 225.876 kb on - strand, within EX28DRAFT_0264at 225.879 kb on + strand, within EX28DRAFT_0264at 225.879 kb on + strand, within EX28DRAFT_0264

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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223,528 + EX28DRAFT_0260 0.65 +1.9
223,634 + EX28DRAFT_0260 0.75 -0.2
223,635 - EX28DRAFT_0260 0.75 +0.1
223,635 - EX28DRAFT_0260 0.75 -0.4
223,664 + EX28DRAFT_0260 0.78 -1.4
223,692 + EX28DRAFT_0260 0.80 +0.2
223,820 - +0.4
223,839 - -0.2
223,898 - +0.1
223,938 - EX28DRAFT_0261 0.10 +0.1
224,078 + EX28DRAFT_0261 0.36 +0.8
224,152 - EX28DRAFT_0261 0.50 -0.1
224,249 + EX28DRAFT_0261 0.67 -1.0
224,440 + -0.5
224,440 + +0.2
224,441 - -0.1
224,441 - +0.5
224,441 - +0.0
224,441 - +0.3
224,497 + EX28DRAFT_0262 0.16 -1.9
224,545 + EX28DRAFT_0262 0.26 +0.6
224,709 + EX28DRAFT_0262 0.62 +0.7
224,710 - EX28DRAFT_0262 0.62 -3.0
224,754 - EX28DRAFT_0262 0.72 -0.0
224,809 + EX28DRAFT_0262 0.84 -0.1
224,875 + -0.6
224,875 + -0.3
224,878 - -0.2
224,880 - -0.0
224,880 - +0.4
224,889 + -0.1
224,961 + EX28DRAFT_0263 0.14 -0.3
225,073 + EX28DRAFT_0263 0.39 +0.7
225,073 + EX28DRAFT_0263 0.39 +0.1
225,074 - EX28DRAFT_0263 0.40 +0.1
225,074 - EX28DRAFT_0263 0.40 -0.3
225,074 - EX28DRAFT_0263 0.40 -2.7
225,074 - EX28DRAFT_0263 0.40 +0.5
225,112 - EX28DRAFT_0263 0.48 -0.2
225,112 - EX28DRAFT_0263 0.48 -2.5
225,156 + EX28DRAFT_0263 0.58 +0.0
225,266 + EX28DRAFT_0263 0.82 -0.6
225,267 - EX28DRAFT_0263 0.82 -0.1
225,295 - EX28DRAFT_0263 0.89 -0.1
225,299 + EX28DRAFT_0263 0.90 +1.3
225,299 + EX28DRAFT_0263 0.90 +0.4
225,300 - EX28DRAFT_0263 0.90 +0.8
225,318 - -0.0
225,318 - +0.0
225,370 - -1.1
225,370 - -0.3
225,384 + +0.1
225,384 + -0.4
225,388 - -0.7
225,419 + +0.9
225,480 + -0.2
225,480 + -0.6
225,480 + -1.6
225,480 + +0.1
225,480 + -1.1
225,480 + +0.7
225,480 + +1.0
225,480 + +1.8
225,480 + +0.0
225,481 - +0.3
225,481 - -0.1
225,481 - +0.0
225,481 - +0.2
225,481 - +0.6
225,481 - +0.3
225,481 - -0.2
225,482 + +1.8
225,482 + +0.7
225,482 + +0.8
225,482 + +0.5
225,511 - -0.4
225,555 + +0.7
225,555 + -0.2
225,555 + -0.5
225,556 - +0.5
225,556 - +0.9
225,556 - -0.1
225,589 + -0.2
225,656 - EX28DRAFT_0264 0.14 +0.0
225,823 - EX28DRAFT_0264 0.27 -0.5
225,876 - EX28DRAFT_0264 0.31 -0.1
225,879 + EX28DRAFT_0264 0.31 -0.4
225,879 + EX28DRAFT_0264 0.31 -0.1

Or see this region's nucleotide sequence