Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0251

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0249 and EX28DRAFT_0250 are separated by 16 nucleotidesEX28DRAFT_0250 and EX28DRAFT_0251 are separated by 45 nucleotidesEX28DRAFT_0251 and EX28DRAFT_0252 overlap by 4 nucleotides EX28DRAFT_0249: EX28DRAFT_0249 - Rhs element Vgr protein, at 205,663 to 208,035 _0249 EX28DRAFT_0250: EX28DRAFT_0250 - PAAR motif, at 208,052 to 208,318 _0250 EX28DRAFT_0251: EX28DRAFT_0251 - hypothetical protein, at 208,364 to 211,159 _0251 EX28DRAFT_0252: EX28DRAFT_0252 - hypothetical protein, at 211,156 to 212,118 _0252 Position (kb) 208 209 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 207.579 kb on - strand, within EX28DRAFT_0249at 207.630 kb on + strand, within EX28DRAFT_0249at 207.633 kb on + strand, within EX28DRAFT_0249at 207.710 kb on - strand, within EX28DRAFT_0249at 207.710 kb on - strand, within EX28DRAFT_0249at 207.810 kb on + strandat 207.820 kb on - strandat 207.855 kb on + strandat 207.916 kb on - strandat 208.020 kb on - strandat 208.030 kb on - strandat 208.033 kb on + strandat 208.036 kb on + strandat 208.159 kb on + strand, within EX28DRAFT_0250at 208.234 kb on - strand, within EX28DRAFT_0250at 208.234 kb on - strand, within EX28DRAFT_0250at 208.283 kb on - strand, within EX28DRAFT_0250at 208.343 kb on + strandat 208.363 kb on + strandat 208.380 kb on + strandat 208.381 kb on - strandat 208.418 kb on + strandat 208.442 kb on - strandat 208.444 kb on + strandat 208.445 kb on - strandat 208.511 kb on + strandat 208.538 kb on + strandat 208.545 kb on - strandat 208.592 kb on + strandat 208.684 kb on + strand, within EX28DRAFT_0251at 208.684 kb on + strand, within EX28DRAFT_0251at 208.684 kb on + strand, within EX28DRAFT_0251at 208.726 kb on + strand, within EX28DRAFT_0251at 208.835 kb on - strand, within EX28DRAFT_0251at 208.837 kb on - strand, within EX28DRAFT_0251at 209.184 kb on + strand, within EX28DRAFT_0251at 209.365 kb on + strand, within EX28DRAFT_0251at 209.369 kb on + strand, within EX28DRAFT_0251at 209.369 kb on + strand, within EX28DRAFT_0251at 209.369 kb on + strand, within EX28DRAFT_0251at 209.370 kb on - strand, within EX28DRAFT_0251at 209.424 kb on + strand, within EX28DRAFT_0251at 209.425 kb on - strand, within EX28DRAFT_0251at 209.551 kb on - strand, within EX28DRAFT_0251at 209.636 kb on + strand, within EX28DRAFT_0251at 209.677 kb on + strand, within EX28DRAFT_0251at 209.684 kb on + strand, within EX28DRAFT_0251at 209.713 kb on + strand, within EX28DRAFT_0251at 209.729 kb on - strand, within EX28DRAFT_0251at 209.820 kb on - strand, within EX28DRAFT_0251at 209.883 kb on + strand, within EX28DRAFT_0251at 209.904 kb on - strand, within EX28DRAFT_0251at 209.964 kb on + strand, within EX28DRAFT_0251at 209.985 kb on - strand, within EX28DRAFT_0251at 209.997 kb on + strand, within EX28DRAFT_0251at 210.096 kb on - strand, within EX28DRAFT_0251at 210.184 kb on + strand, within EX28DRAFT_0251at 210.185 kb on - strand, within EX28DRAFT_0251at 210.270 kb on + strand, within EX28DRAFT_0251at 210.274 kb on + strand, within EX28DRAFT_0251at 210.275 kb on - strand, within EX28DRAFT_0251at 210.291 kb on + strand, within EX28DRAFT_0251at 210.670 kb on + strand, within EX28DRAFT_0251at 210.676 kb on - strand, within EX28DRAFT_0251at 210.734 kb on + strand, within EX28DRAFT_0251at 210.864 kb on + strand, within EX28DRAFT_0251at 210.864 kb on + strand, within EX28DRAFT_0251at 210.865 kb on - strand, within EX28DRAFT_0251at 210.865 kb on - strand, within EX28DRAFT_0251at 210.865 kb on - strand, within EX28DRAFT_0251at 210.865 kb on - strand, within EX28DRAFT_0251at 210.876 kb on + strand, within EX28DRAFT_0251at 210.929 kb on + strandat 210.929 kb on + strandat 210.930 kb on - strandat 210.930 kb on - strandat 210.930 kb on - strandat 210.930 kb on - strandat 210.931 kb on + strandat 211.062 kb on + strandat 211.062 kb on + strandat 211.152 kb on + strandat 211.152 kb on + strandat 211.152 kb on + strandat 211.152 kb on + strandat 211.181 kb on + strandat 211.181 kb on + strandat 211.225 kb on - strandat 211.226 kb on + strandat 211.363 kb on + strand, within EX28DRAFT_0252at 211.406 kb on + strand, within EX28DRAFT_0252at 211.407 kb on - strand, within EX28DRAFT_0252at 211.533 kb on + strand, within EX28DRAFT_0252at 211.592 kb on + strand, within EX28DRAFT_0252at 211.593 kb on - strand, within EX28DRAFT_0252at 211.625 kb on - strand, within EX28DRAFT_0252at 211.634 kb on - strand, within EX28DRAFT_0252at 211.634 kb on - strand, within EX28DRAFT_0252at 211.664 kb on + strand, within EX28DRAFT_0252at 211.665 kb on - strand, within EX28DRAFT_0252at 211.670 kb on + strand, within EX28DRAFT_0252at 211.671 kb on - strand, within EX28DRAFT_0252at 211.831 kb on + strand, within EX28DRAFT_0252at 211.843 kb on + strand, within EX28DRAFT_0252at 211.903 kb on - strand, within EX28DRAFT_0252

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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207,579 - EX28DRAFT_0249 0.81 +0.9
207,630 + EX28DRAFT_0249 0.83 +0.3
207,633 + EX28DRAFT_0249 0.83 -0.6
207,710 - EX28DRAFT_0249 0.86 -0.2
207,710 - EX28DRAFT_0249 0.86 +0.4
207,810 + +0.1
207,820 - +0.1
207,855 + +0.1
207,916 - -0.3
208,020 - +0.5
208,030 - +0.2
208,033 + +0.3
208,036 + -0.1
208,159 + EX28DRAFT_0250 0.40 +0.1
208,234 - EX28DRAFT_0250 0.68 -1.8
208,234 - EX28DRAFT_0250 0.68 -0.4
208,283 - EX28DRAFT_0250 0.87 -1.7
208,343 + -0.4
208,363 + +0.0
208,380 + +0.4
208,381 - -0.2
208,418 + -0.5
208,442 - +0.7
208,444 + -0.6
208,445 - -0.2
208,511 + -0.4
208,538 + +0.2
208,545 - +0.2
208,592 + +0.0
208,684 + EX28DRAFT_0251 0.11 +0.7
208,684 + EX28DRAFT_0251 0.11 -0.0
208,684 + EX28DRAFT_0251 0.11 +1.8
208,726 + EX28DRAFT_0251 0.13 +0.2
208,835 - EX28DRAFT_0251 0.17 +0.1
208,837 - EX28DRAFT_0251 0.17 +0.5
209,184 + EX28DRAFT_0251 0.29 +0.4
209,365 + EX28DRAFT_0251 0.36 -2.6
209,369 + EX28DRAFT_0251 0.36 +0.1
209,369 + EX28DRAFT_0251 0.36 -0.6
209,369 + EX28DRAFT_0251 0.36 -0.3
209,370 - EX28DRAFT_0251 0.36 -0.7
209,424 + EX28DRAFT_0251 0.38 +0.7
209,425 - EX28DRAFT_0251 0.38 -1.0
209,551 - EX28DRAFT_0251 0.42 +1.2
209,636 + EX28DRAFT_0251 0.45 -1.6
209,677 + EX28DRAFT_0251 0.47 +0.2
209,684 + EX28DRAFT_0251 0.47 -0.9
209,713 + EX28DRAFT_0251 0.48 +3.2
209,729 - EX28DRAFT_0251 0.49 +2.3
209,820 - EX28DRAFT_0251 0.52 -0.7
209,883 + EX28DRAFT_0251 0.54 +1.7
209,904 - EX28DRAFT_0251 0.55 -0.3
209,964 + EX28DRAFT_0251 0.57 +2.0
209,985 - EX28DRAFT_0251 0.58 +0.0
209,997 + EX28DRAFT_0251 0.58 -0.1
210,096 - EX28DRAFT_0251 0.62 +0.2
210,184 + EX28DRAFT_0251 0.65 +0.4
210,185 - EX28DRAFT_0251 0.65 -0.8
210,270 + EX28DRAFT_0251 0.68 +0.4
210,274 + EX28DRAFT_0251 0.68 +0.3
210,275 - EX28DRAFT_0251 0.68 +0.1
210,291 + EX28DRAFT_0251 0.69 +0.1
210,670 + EX28DRAFT_0251 0.82 +0.0
210,676 - EX28DRAFT_0251 0.83 -0.4
210,734 + EX28DRAFT_0251 0.85 +0.2
210,864 + EX28DRAFT_0251 0.89 -0.7
210,864 + EX28DRAFT_0251 0.89 +0.3
210,865 - EX28DRAFT_0251 0.89 +0.3
210,865 - EX28DRAFT_0251 0.89 -0.9
210,865 - EX28DRAFT_0251 0.89 +0.3
210,865 - EX28DRAFT_0251 0.89 +0.1
210,876 + EX28DRAFT_0251 0.90 +0.6
210,929 + -0.2
210,929 + -1.1
210,930 - +0.2
210,930 - -0.5
210,930 - -0.3
210,930 - +0.5
210,931 + -0.4
211,062 + -0.4
211,062 + -0.9
211,152 + -0.2
211,152 + +1.6
211,152 + -1.4
211,152 + +0.2
211,181 + +0.4
211,181 + +0.5
211,225 - -0.0
211,226 + +0.1
211,363 + EX28DRAFT_0252 0.21 +0.1
211,406 + EX28DRAFT_0252 0.26 -2.9
211,407 - EX28DRAFT_0252 0.26 +0.0
211,533 + EX28DRAFT_0252 0.39 +0.2
211,592 + EX28DRAFT_0252 0.45 -1.5
211,593 - EX28DRAFT_0252 0.45 +1.8
211,625 - EX28DRAFT_0252 0.49 +0.5
211,634 - EX28DRAFT_0252 0.50 +0.2
211,634 - EX28DRAFT_0252 0.50 -0.3
211,664 + EX28DRAFT_0252 0.53 +2.6
211,665 - EX28DRAFT_0252 0.53 +1.2
211,670 + EX28DRAFT_0252 0.53 -0.3
211,671 - EX28DRAFT_0252 0.53 -0.5
211,831 + EX28DRAFT_0252 0.70 -0.7
211,843 + EX28DRAFT_0252 0.71 -0.1
211,903 - EX28DRAFT_0252 0.78 +0.2

Or see this region's nucleotide sequence