Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0235 and EX28DRAFT_0236 are separated by 0 nucleotides EX28DRAFT_0236 and EX28DRAFT_0237 are separated by 205 nucleotides
EX28DRAFT_0235: EX28DRAFT_0235 - indolepyruvate decarboxylase, Erwinia family, at 186,188 to 187,846
_0235
EX28DRAFT_0236: EX28DRAFT_0236 - Chloride channel protein EriC, at 187,847 to 189,082
_0236
EX28DRAFT_0237: EX28DRAFT_0237 - glucokinase, proteobacterial type, at 189,288 to 190,253
_0237
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 186.968 kb on + strand, within EX28DRAFT_0235 at 187.512 kb on + strand, within EX28DRAFT_0235 at 187.580 kb on + strand, within EX28DRAFT_0235 at 187.580 kb on + strand, within EX28DRAFT_0235 at 187.619 kb on + strand, within EX28DRAFT_0235 at 187.621 kb on + strand, within EX28DRAFT_0235 at 187.621 kb on + strand, within EX28DRAFT_0235 at 187.622 kb on - strand, within EX28DRAFT_0235 at 187.622 kb on - strand, within EX28DRAFT_0235 at 187.817 kb on - strand at 187.849 kb on - strand at 188.018 kb on - strand, within EX28DRAFT_0236 at 188.161 kb on + strand, within EX28DRAFT_0236 at 188.161 kb on + strand, within EX28DRAFT_0236 at 188.182 kb on - strand, within EX28DRAFT_0236 at 188.195 kb on - strand, within EX28DRAFT_0236 at 188.306 kb on + strand, within EX28DRAFT_0236 at 188.306 kb on + strand, within EX28DRAFT_0236 at 188.306 kb on + strand, within EX28DRAFT_0236 at 188.307 kb on - strand, within EX28DRAFT_0236 at 188.327 kb on - strand, within EX28DRAFT_0236 at 188.327 kb on - strand, within EX28DRAFT_0236 at 188.416 kb on + strand, within EX28DRAFT_0236 at 188.702 kb on - strand, within EX28DRAFT_0236 at 188.960 kb on + strand at 189.029 kb on - strand at 189.033 kb on - strand at 189.096 kb on + strand at 189.106 kb on + strand at 189.109 kb on + strand at 189.109 kb on + strand at 189.109 kb on + strand at 189.110 kb on - strand at 189.110 kb on - strand at 189.110 kb on - strand at 189.115 kb on - strand at 189.115 kb on - strand at 189.127 kb on - strand at 189.141 kb on + strand at 189.211 kb on - strand at 189.259 kb on + strand at 189.259 kb on + strand at 189.259 kb on + strand at 189.260 kb on - strand at 189.260 kb on - strand at 189.281 kb on + strand at 189.297 kb on + strand at 189.298 kb on - strand at 189.353 kb on + strand at 189.519 kb on - strand, within EX28DRAFT_0237 at 189.809 kb on - strand, within EX28DRAFT_0237 at 189.809 kb on - strand, within EX28DRAFT_0237 at 189.817 kb on + strand, within EX28DRAFT_0237 at 190.062 kb on + strand, within EX28DRAFT_0237 at 190.063 kb on - strand, within EX28DRAFT_0237 at 190.065 kb on - strand, within EX28DRAFT_0237
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 186,968 + EX28DRAFT_0235 0.47 -0.6 187,512 + EX28DRAFT_0235 0.80 -5.8 187,580 + EX28DRAFT_0235 0.84 +0.3 187,580 + EX28DRAFT_0235 0.84 -0.1 187,619 + EX28DRAFT_0235 0.86 -0.7 187,621 + EX28DRAFT_0235 0.86 +0.8 187,621 + EX28DRAFT_0235 0.86 -0.4 187,622 - EX28DRAFT_0235 0.86 +1.4 187,622 - EX28DRAFT_0235 0.86 -0.3 187,817 - +0.6 187,849 - +0.5 188,018 - EX28DRAFT_0236 0.14 +0.2 188,161 + EX28DRAFT_0236 0.25 +0.3 188,161 + EX28DRAFT_0236 0.25 +1.1 188,182 - EX28DRAFT_0236 0.27 +0.2 188,195 - EX28DRAFT_0236 0.28 -0.1 188,306 + EX28DRAFT_0236 0.37 +0.8 188,306 + EX28DRAFT_0236 0.37 +1.2 188,306 + EX28DRAFT_0236 0.37 +1.1 188,307 - EX28DRAFT_0236 0.37 +0.5 188,327 - EX28DRAFT_0236 0.39 +0.5 188,327 - EX28DRAFT_0236 0.39 -2.7 188,416 + EX28DRAFT_0236 0.46 +1.9 188,702 - EX28DRAFT_0236 0.69 +1.2 188,960 + +1.3 189,029 - -0.6 189,033 - +0.7 189,096 + +0.1 189,106 + +0.1 189,109 + -1.2 189,109 + +0.1 189,109 + +0.1 189,110 - -0.6 189,110 - +0.1 189,110 - -3.0 189,115 - -0.3 189,115 - -0.9 189,127 - -0.8 189,141 + -0.8 189,211 - -1.8 189,259 + +0.1 189,259 + +0.7 189,259 + +0.1 189,260 - -0.4 189,260 - +0.1 189,281 + -1.3 189,297 + -0.7 189,298 - -1.3 189,353 + -0.7 189,519 - EX28DRAFT_0237 0.24 -0.7 189,809 - EX28DRAFT_0237 0.54 -0.1 189,809 - EX28DRAFT_0237 0.54 +0.1 189,817 + EX28DRAFT_0237 0.55 +1.2 190,062 + EX28DRAFT_0237 0.80 +0.0 190,063 - EX28DRAFT_0237 0.80 -0.5 190,065 - EX28DRAFT_0237 0.80 -0.2
Or see this region's nucleotide sequence