Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0218

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0217 and EX28DRAFT_0218 are separated by 1 nucleotidesEX28DRAFT_0218 and EX28DRAFT_0219 overlap by 4 nucleotides EX28DRAFT_0217: EX28DRAFT_0217 - DNA ligase, NAD-dependent, at 171,333 to 173,348 _0217 EX28DRAFT_0218: EX28DRAFT_0218 - Uncharacterized protein conserved in bacteria, at 173,350 to 173,565 _0218 EX28DRAFT_0219: EX28DRAFT_0219 - Predicted Na+-dependent transporter, at 173,562 to 174,557 _0219 Position (kb) 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1at 173.346 kb on + strandat 173.383 kb on - strand, within EX28DRAFT_0218at 173.404 kb on + strand, within EX28DRAFT_0218at 173.405 kb on - strand, within EX28DRAFT_0218at 173.440 kb on + strand, within EX28DRAFT_0218at 173.510 kb on + strand, within EX28DRAFT_0218at 173.564 kb on - strandat 173.618 kb on - strandat 173.865 kb on - strand, within EX28DRAFT_0219at 173.891 kb on + strand, within EX28DRAFT_0219at 174.080 kb on + strand, within EX28DRAFT_0219at 174.203 kb on + strand, within EX28DRAFT_0219at 174.204 kb on - strand, within EX28DRAFT_0219at 174.204 kb on - strand, within EX28DRAFT_0219at 174.204 kb on - strand, within EX28DRAFT_0219at 174.247 kb on + strand, within EX28DRAFT_0219at 174.383 kb on + strand, within EX28DRAFT_0219at 174.416 kb on + strand, within EX28DRAFT_0219at 174.501 kb on + strandat 174.550 kb on - strandat 174.550 kb on - strandat 174.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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173,346 + +0.9
173,383 - EX28DRAFT_0218 0.15 -0.3
173,404 + EX28DRAFT_0218 0.25 +0.4
173,405 - EX28DRAFT_0218 0.25 -0.9
173,440 + EX28DRAFT_0218 0.42 -0.9
173,510 + EX28DRAFT_0218 0.74 -0.1
173,564 - +1.0
173,618 - -0.3
173,865 - EX28DRAFT_0219 0.30 -1.4
173,891 + EX28DRAFT_0219 0.33 +0.1
174,080 + EX28DRAFT_0219 0.52 -1.3
174,203 + EX28DRAFT_0219 0.64 -0.6
174,204 - EX28DRAFT_0219 0.64 -3.2
174,204 - EX28DRAFT_0219 0.64 -0.9
174,204 - EX28DRAFT_0219 0.64 -0.3
174,247 + EX28DRAFT_0219 0.69 -2.0
174,383 + EX28DRAFT_0219 0.82 +0.1
174,416 + EX28DRAFT_0219 0.86 -2.2
174,501 + -2.2
174,550 - -0.6
174,550 - -0.8
174,558 - -0.6

Or see this region's nucleotide sequence