Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0205

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0204 and EX28DRAFT_0205 are separated by 172 nucleotidesEX28DRAFT_0205 and EX28DRAFT_0206 overlap by 1 nucleotidesEX28DRAFT_0206 and EX28DRAFT_0207 overlap by 1 nucleotides EX28DRAFT_0204: EX28DRAFT_0204 - Dyp-type peroxidase family, at 158,474 to 159,373 _0204 EX28DRAFT_0205: EX28DRAFT_0205 - sulfate/thiosulfate-binding protein, at 159,546 to 160,559 _0205 EX28DRAFT_0206: EX28DRAFT_0206 - sulfate ABC transporter, permease protein CysT, at 160,559 to 161,392 _0206 EX28DRAFT_0207: EX28DRAFT_0207 - sulfate ABC transporter, permease protein CysW, at 161,392 to 162,267 _0207 Position (kb) 159 160 161Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 158.787 kb on + strand, within EX28DRAFT_0204at 158.842 kb on - strand, within EX28DRAFT_0204at 158.981 kb on + strand, within EX28DRAFT_0204at 158.981 kb on + strand, within EX28DRAFT_0204at 158.982 kb on - strand, within EX28DRAFT_0204at 159.065 kb on - strand, within EX28DRAFT_0204at 159.067 kb on + strand, within EX28DRAFT_0204at 159.068 kb on - strand, within EX28DRAFT_0204at 159.239 kb on + strand, within EX28DRAFT_0204at 159.241 kb on + strand, within EX28DRAFT_0204at 159.241 kb on + strand, within EX28DRAFT_0204at 159.335 kb on + strandat 159.336 kb on - strandat 159.336 kb on - strandat 159.372 kb on - strandat 159.372 kb on - strandat 159.372 kb on - strandat 159.434 kb on - strandat 159.470 kb on + strandat 159.497 kb on + strandat 159.503 kb on + strandat 159.503 kb on + strandat 159.503 kb on + strandat 159.504 kb on - strandat 159.506 kb on + strandat 159.507 kb on - strandat 159.512 kb on + strandat 159.512 kb on + strandat 159.513 kb on - strandat 159.513 kb on - strandat 159.513 kb on - strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.514 kb on + strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.515 kb on - strandat 159.519 kb on + strandat 159.520 kb on - strandat 159.533 kb on - strandat 159.535 kb on - strandat 159.554 kb on + strandat 159.629 kb on - strandat 159.672 kb on - strand, within EX28DRAFT_0205at 159.801 kb on + strand, within EX28DRAFT_0205at 159.802 kb on - strand, within EX28DRAFT_0205at 159.802 kb on - strand, within EX28DRAFT_0205at 160.023 kb on - strand, within EX28DRAFT_0205at 160.026 kb on + strand, within EX28DRAFT_0205at 160.350 kb on + strand, within EX28DRAFT_0205at 160.351 kb on - strand, within EX28DRAFT_0205at 160.356 kb on + strand, within EX28DRAFT_0205at 160.393 kb on - strand, within EX28DRAFT_0205at 160.393 kb on - strand, within EX28DRAFT_0205at 160.417 kb on + strand, within EX28DRAFT_0205at 160.418 kb on - strand, within EX28DRAFT_0205at 160.418 kb on - strand, within EX28DRAFT_0205at 160.436 kb on + strand, within EX28DRAFT_0205at 160.437 kb on - strand, within EX28DRAFT_0205at 160.528 kb on + strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.553 kb on + strandat 160.554 kb on - strandat 160.557 kb on + strandat 160.557 kb on + strandat 160.558 kb on - strandat 160.558 kb on - strandat 160.603 kb on - strandat 160.738 kb on + strand, within EX28DRAFT_0206at 160.738 kb on + strand, within EX28DRAFT_0206at 160.739 kb on - strand, within EX28DRAFT_0206at 160.970 kb on + strand, within EX28DRAFT_0206at 160.970 kb on + strand, within EX28DRAFT_0206at 160.970 kb on + strand, within EX28DRAFT_0206at 160.971 kb on - strand, within EX28DRAFT_0206at 161.382 kb on + strandat 161.382 kb on + strandat 161.383 kb on - strandat 161.383 kb on - strandat 161.404 kb on - strandat 161.509 kb on + strand, within EX28DRAFT_0207at 161.509 kb on + strand, within EX28DRAFT_0207at 161.510 kb on - strand, within EX28DRAFT_0207at 161.510 kb on - strand, within EX28DRAFT_0207at 161.511 kb on + strand, within EX28DRAFT_0207at 161.512 kb on - strand, within EX28DRAFT_0207

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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158,787 + EX28DRAFT_0204 0.35 +1.0
158,842 - EX28DRAFT_0204 0.41 +0.4
158,981 + EX28DRAFT_0204 0.56 +0.8
158,981 + EX28DRAFT_0204 0.56 +0.3
158,982 - EX28DRAFT_0204 0.56 -0.1
159,065 - EX28DRAFT_0204 0.66 +0.3
159,067 + EX28DRAFT_0204 0.66 -0.1
159,068 - EX28DRAFT_0204 0.66 +0.3
159,239 + EX28DRAFT_0204 0.85 -0.4
159,241 + EX28DRAFT_0204 0.85 -2.9
159,241 + EX28DRAFT_0204 0.85 -0.3
159,335 + +0.2
159,336 - -0.2
159,336 - +0.4
159,372 - +2.4
159,372 - -0.2
159,372 - -1.4
159,434 - -0.0
159,470 + -2.9
159,497 + -1.6
159,503 + +0.9
159,503 + +0.0
159,503 + +2.2
159,504 - -2.9
159,506 + -0.1
159,507 - -2.3
159,512 + -0.3
159,512 + -2.3
159,513 - -1.6
159,513 - -4.0
159,513 - -4.4
159,514 + -0.1
159,514 + -0.1
159,514 + -0.5
159,514 + +0.4
159,514 + -1.4
159,515 - -1.9
159,515 - -2.5
159,515 - -2.8
159,515 - -4.6
159,515 - -2.3
159,515 - -3.1
159,519 + +0.2
159,520 - -2.4
159,533 - -1.4
159,535 - -1.9
159,554 + -4.9
159,629 - -1.2
159,672 - EX28DRAFT_0205 0.12 -2.8
159,801 + EX28DRAFT_0205 0.25 -0.8
159,802 - EX28DRAFT_0205 0.25 -1.1
159,802 - EX28DRAFT_0205 0.25 -2.5
160,023 - EX28DRAFT_0205 0.47 -4.0
160,026 + EX28DRAFT_0205 0.47 -2.9
160,350 + EX28DRAFT_0205 0.79 -3.4
160,351 - EX28DRAFT_0205 0.79 -2.2
160,356 + EX28DRAFT_0205 0.80 -1.8
160,393 - EX28DRAFT_0205 0.84 -2.1
160,393 - EX28DRAFT_0205 0.84 -3.2
160,417 + EX28DRAFT_0205 0.86 -4.8
160,418 - EX28DRAFT_0205 0.86 -1.3
160,418 - EX28DRAFT_0205 0.86 -1.3
160,436 + EX28DRAFT_0205 0.88 -2.7
160,437 - EX28DRAFT_0205 0.88 -2.3
160,528 + -2.6
160,553 + -0.3
160,553 + -0.4
160,553 + -1.1
160,554 - -2.1
160,557 + -4.7
160,557 + -2.6
160,558 - -2.5
160,558 - +2.2
160,603 - -2.3
160,738 + EX28DRAFT_0206 0.21 -3.7
160,738 + EX28DRAFT_0206 0.21 -4.2
160,739 - EX28DRAFT_0206 0.22 -0.5
160,970 + EX28DRAFT_0206 0.49 -1.7
160,970 + EX28DRAFT_0206 0.49 -2.8
160,970 + EX28DRAFT_0206 0.49 -3.1
160,971 - EX28DRAFT_0206 0.49 -1.9
161,382 + -5.5
161,382 + -2.7
161,383 - -3.0
161,383 - -4.0
161,404 - -3.2
161,509 + EX28DRAFT_0207 0.13 -0.2
161,509 + EX28DRAFT_0207 0.13 -2.9
161,510 - EX28DRAFT_0207 0.13 -2.1
161,510 - EX28DRAFT_0207 0.13 -3.2
161,511 + EX28DRAFT_0207 0.14 -4.0
161,512 - EX28DRAFT_0207 0.14 -0.7

Or see this region's nucleotide sequence