Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0200 and EX28DRAFT_0201 are separated by 212 nucleotides EX28DRAFT_0201 and EX28DRAFT_0202 overlap by 14 nucleotides EX28DRAFT_0202 and EX28DRAFT_0203 are separated by 63 nucleotides EX28DRAFT_0203 and EX28DRAFT_0204 are separated by 92 nucleotides
EX28DRAFT_0200: EX28DRAFT_0200 - N-acetylmuramoyl-L-alanine amidase, at 155,793 to 156,668
_0200
EX28DRAFT_0201: EX28DRAFT_0201 - Acetyltransferase (GNAT) family, at 156,881 to 157,306
_0201
EX28DRAFT_0202: EX28DRAFT_0202 - Protein of unknown function (DUF2919), at 157,293 to 157,742
_0202
EX28DRAFT_0203: EX28DRAFT_0203 - Protein of unknown function (DUF1131), at 157,806 to 158,381
_0203
EX28DRAFT_0204: EX28DRAFT_0204 - Dyp-type peroxidase family, at 158,474 to 159,373
_0204
Position (kb) 157
158 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 156.319 kb on + strand, within EX28DRAFT_0200 at 156.319 kb on + strand, within EX28DRAFT_0200 at 156.680 kb on - strand at 156.703 kb on + strand at 156.704 kb on - strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.711 kb on - strand at 156.768 kb on - strand at 156.878 kb on - strand at 156.988 kb on + strand, within EX28DRAFT_0201 at 156.988 kb on + strand, within EX28DRAFT_0201 at 156.988 kb on + strand, within EX28DRAFT_0201 at 156.989 kb on - strand, within EX28DRAFT_0201 at 157.088 kb on + strand, within EX28DRAFT_0201 at 157.092 kb on - strand, within EX28DRAFT_0201 at 157.092 kb on - strand, within EX28DRAFT_0201 at 157.232 kb on + strand, within EX28DRAFT_0201 at 157.232 kb on + strand, within EX28DRAFT_0201 at 157.232 kb on + strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.406 kb on - strand, within EX28DRAFT_0202 at 157.456 kb on - strand, within EX28DRAFT_0202 at 157.787 kb on - strand at 157.878 kb on - strand, within EX28DRAFT_0203 at 158.045 kb on + strand, within EX28DRAFT_0203 at 158.046 kb on - strand, within EX28DRAFT_0203 at 158.046 kb on - strand, within EX28DRAFT_0203 at 158.056 kb on - strand, within EX28DRAFT_0203 at 158.058 kb on + strand, within EX28DRAFT_0203 at 158.165 kb on - strand, within EX28DRAFT_0203 at 158.193 kb on + strand, within EX28DRAFT_0203 at 158.194 kb on - strand, within EX28DRAFT_0203 at 158.194 kb on - strand, within EX28DRAFT_0203 at 158.195 kb on + strand, within EX28DRAFT_0203 at 158.256 kb on - strand, within EX28DRAFT_0203 at 158.283 kb on + strand, within EX28DRAFT_0203 at 158.283 kb on + strand, within EX28DRAFT_0203 at 158.284 kb on - strand, within EX28DRAFT_0203 at 158.342 kb on + strand at 158.343 kb on - strand at 158.379 kb on + strand at 158.379 kb on + strand at 158.419 kb on - strand at 158.420 kb on + strand at 158.423 kb on + strand at 158.458 kb on + strand at 158.459 kb on - strand at 158.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 156,319 + EX28DRAFT_0200 0.60 +0.0 156,319 + EX28DRAFT_0200 0.60 -0.8 156,680 - -0.5 156,703 + +0.5 156,704 - +2.4 156,705 + +0.1 156,706 - -0.3 156,711 - -0.0 156,768 - +0.1 156,878 - +0.3 156,988 + EX28DRAFT_0201 0.25 +0.2 156,988 + EX28DRAFT_0201 0.25 -0.1 156,988 + EX28DRAFT_0201 0.25 +0.0 156,989 - EX28DRAFT_0201 0.25 +0.1 157,088 + EX28DRAFT_0201 0.49 +0.1 157,092 - EX28DRAFT_0201 0.50 +0.2 157,092 - EX28DRAFT_0201 0.50 -1.5 157,232 + EX28DRAFT_0201 0.82 -0.1 157,232 + EX28DRAFT_0201 0.82 +0.1 157,232 + EX28DRAFT_0201 0.82 +0.7 157,233 - EX28DRAFT_0201 0.83 +0.2 157,233 - EX28DRAFT_0201 0.83 -0.0 157,233 - EX28DRAFT_0201 0.83 -1.7 157,233 - EX28DRAFT_0201 0.83 -0.1 157,406 - EX28DRAFT_0202 0.25 -1.8 157,456 - EX28DRAFT_0202 0.36 -0.7 157,787 - +0.2 157,878 - EX28DRAFT_0203 0.12 +0.4 158,045 + EX28DRAFT_0203 0.41 -0.7 158,046 - EX28DRAFT_0203 0.42 +0.2 158,046 - EX28DRAFT_0203 0.42 +0.4 158,056 - EX28DRAFT_0203 0.43 -1.0 158,058 + EX28DRAFT_0203 0.44 +0.4 158,165 - EX28DRAFT_0203 0.62 +1.0 158,193 + EX28DRAFT_0203 0.67 +0.4 158,194 - EX28DRAFT_0203 0.67 -2.2 158,194 - EX28DRAFT_0203 0.67 -0.1 158,195 + EX28DRAFT_0203 0.68 +0.3 158,256 - EX28DRAFT_0203 0.78 -2.0 158,283 + EX28DRAFT_0203 0.83 +0.6 158,283 + EX28DRAFT_0203 0.83 +1.0 158,284 - EX28DRAFT_0203 0.83 +0.2 158,342 + +4.2 158,343 - -0.4 158,379 + +0.6 158,379 + +0.2 158,419 - +0.5 158,420 + -0.6 158,423 + +0.1 158,458 + +0.5 158,459 - -1.7 158,543 - -0.2
Or see this region's nucleotide sequence