Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0198 and EX28DRAFT_0199 are separated by 56 nucleotides EX28DRAFT_0199 and EX28DRAFT_0200 overlap by 1 nucleotides EX28DRAFT_0200 and EX28DRAFT_0201 are separated by 212 nucleotides EX28DRAFT_0201 and EX28DRAFT_0202 overlap by 14 nucleotides
EX28DRAFT_0198: EX28DRAFT_0198 - Malic enzyme, at 152,558 to 154,837
_0198
EX28DRAFT_0199: EX28DRAFT_0199 - coproporphyrinogen oxidase (EC 1.3.3.3), at 154,894 to 155,793
_0199
EX28DRAFT_0200: EX28DRAFT_0200 - N-acetylmuramoyl-L-alanine amidase, at 155,793 to 156,668
_0200
EX28DRAFT_0201: EX28DRAFT_0201 - Acetyltransferase (GNAT) family, at 156,881 to 157,306
_0201
EX28DRAFT_0202: EX28DRAFT_0202 - Protein of unknown function (DUF2919), at 157,293 to 157,742
_0202
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.836 kb on - strand at 154.895 kb on + strand at 154.896 kb on - strand at 154.896 kb on - strand at 154.896 kb on - strand at 154.967 kb on + strand at 155.169 kb on - strand, within EX28DRAFT_0199 at 155.391 kb on - strand, within EX28DRAFT_0199 at 155.846 kb on + strand at 156.027 kb on - strand, within EX28DRAFT_0200 at 156.027 kb on - strand, within EX28DRAFT_0200 at 156.041 kb on + strand, within EX28DRAFT_0200 at 156.042 kb on - strand, within EX28DRAFT_0200 at 156.075 kb on - strand, within EX28DRAFT_0200 at 156.109 kb on - strand, within EX28DRAFT_0200 at 156.252 kb on - strand, within EX28DRAFT_0200 at 156.252 kb on - strand, within EX28DRAFT_0200 at 156.275 kb on + strand, within EX28DRAFT_0200 at 156.276 kb on - strand, within EX28DRAFT_0200 at 156.276 kb on - strand, within EX28DRAFT_0200 at 156.319 kb on + strand, within EX28DRAFT_0200 at 156.319 kb on + strand, within EX28DRAFT_0200 at 156.680 kb on - strand at 156.703 kb on + strand at 156.704 kb on - strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.711 kb on - strand at 156.768 kb on - strand at 156.878 kb on - strand at 156.988 kb on + strand, within EX28DRAFT_0201 at 156.988 kb on + strand, within EX28DRAFT_0201 at 156.988 kb on + strand, within EX28DRAFT_0201 at 156.989 kb on - strand, within EX28DRAFT_0201 at 157.088 kb on + strand, within EX28DRAFT_0201 at 157.092 kb on - strand, within EX28DRAFT_0201 at 157.092 kb on - strand, within EX28DRAFT_0201 at 157.232 kb on + strand, within EX28DRAFT_0201 at 157.232 kb on + strand, within EX28DRAFT_0201 at 157.232 kb on + strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.233 kb on - strand, within EX28DRAFT_0201 at 157.406 kb on - strand, within EX28DRAFT_0202 at 157.456 kb on - strand, within EX28DRAFT_0202
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 154,836 - -0.7 154,895 + -0.2 154,896 - +1.1 154,896 - -0.3 154,896 - -0.4 154,967 + -0.3 155,169 - EX28DRAFT_0199 0.31 -0.4 155,391 - EX28DRAFT_0199 0.55 -0.7 155,846 + +0.2 156,027 - EX28DRAFT_0200 0.27 -0.7 156,027 - EX28DRAFT_0200 0.27 +0.7 156,041 + EX28DRAFT_0200 0.28 -0.8 156,042 - EX28DRAFT_0200 0.28 +0.2 156,075 - EX28DRAFT_0200 0.32 -0.8 156,109 - EX28DRAFT_0200 0.36 +0.4 156,252 - EX28DRAFT_0200 0.52 -0.3 156,252 - EX28DRAFT_0200 0.52 -0.5 156,275 + EX28DRAFT_0200 0.55 -1.0 156,276 - EX28DRAFT_0200 0.55 +0.1 156,276 - EX28DRAFT_0200 0.55 +0.9 156,319 + EX28DRAFT_0200 0.60 +0.0 156,319 + EX28DRAFT_0200 0.60 -0.8 156,680 - -0.5 156,703 + +0.5 156,704 - +2.4 156,705 + +0.1 156,706 - -0.3 156,711 - -0.0 156,768 - +0.1 156,878 - +0.3 156,988 + EX28DRAFT_0201 0.25 +0.2 156,988 + EX28DRAFT_0201 0.25 -0.1 156,988 + EX28DRAFT_0201 0.25 +0.0 156,989 - EX28DRAFT_0201 0.25 +0.1 157,088 + EX28DRAFT_0201 0.49 +0.1 157,092 - EX28DRAFT_0201 0.50 +0.2 157,092 - EX28DRAFT_0201 0.50 -1.5 157,232 + EX28DRAFT_0201 0.82 -0.1 157,232 + EX28DRAFT_0201 0.82 +0.1 157,232 + EX28DRAFT_0201 0.82 +0.7 157,233 - EX28DRAFT_0201 0.83 +0.2 157,233 - EX28DRAFT_0201 0.83 -0.0 157,233 - EX28DRAFT_0201 0.83 -1.7 157,233 - EX28DRAFT_0201 0.83 -0.1 157,406 - EX28DRAFT_0202 0.25 -1.8 157,456 - EX28DRAFT_0202 0.36 -0.7
Or see this region's nucleotide sequence