Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0197 and EX28DRAFT_0198 are separated by 289 nucleotides EX28DRAFT_0198 and EX28DRAFT_0199 are separated by 56 nucleotides EX28DRAFT_0199 and EX28DRAFT_0200 overlap by 1 nucleotides
EX28DRAFT_0197: EX28DRAFT_0197 - transaldolase, at 151,318 to 152,268
_0197
EX28DRAFT_0198: EX28DRAFT_0198 - Malic enzyme, at 152,558 to 154,837
_0198
EX28DRAFT_0199: EX28DRAFT_0199 - coproporphyrinogen oxidase (EC 1.3.3.3), at 154,894 to 155,793
_0199
EX28DRAFT_0200: EX28DRAFT_0200 - N-acetylmuramoyl-L-alanine amidase, at 155,793 to 156,668
_0200
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.644 kb on - strand, within EX28DRAFT_0197 at 151.644 kb on - strand, within EX28DRAFT_0197 at 151.648 kb on - strand, within EX28DRAFT_0197 at 151.688 kb on + strand, within EX28DRAFT_0197 at 151.688 kb on + strand, within EX28DRAFT_0197 at 151.689 kb on - strand, within EX28DRAFT_0197 at 151.689 kb on - strand, within EX28DRAFT_0197 at 151.724 kb on + strand, within EX28DRAFT_0197 at 151.724 kb on + strand, within EX28DRAFT_0197 at 151.725 kb on - strand, within EX28DRAFT_0197 at 151.725 kb on - strand, within EX28DRAFT_0197 at 151.897 kb on - strand, within EX28DRAFT_0197 at 151.897 kb on - strand, within EX28DRAFT_0197 at 151.897 kb on - strand, within EX28DRAFT_0197 at 151.945 kb on - strand, within EX28DRAFT_0197 at 152.035 kb on - strand, within EX28DRAFT_0197 at 152.099 kb on + strand, within EX28DRAFT_0197 at 152.158 kb on + strand, within EX28DRAFT_0197 at 152.268 kb on + strand at 152.269 kb on - strand at 152.276 kb on + strand at 152.277 kb on - strand at 152.404 kb on - strand at 152.406 kb on - strand at 152.484 kb on + strand at 152.484 kb on + strand at 152.519 kb on - strand at 152.519 kb on - strand at 152.554 kb on + strand at 152.555 kb on - strand at 152.736 kb on - strand at 152.736 kb on - strand at 152.845 kb on - strand, within EX28DRAFT_0198 at 152.990 kb on + strand, within EX28DRAFT_0198 at 152.990 kb on + strand, within EX28DRAFT_0198 at 152.991 kb on - strand, within EX28DRAFT_0198 at 152.991 kb on - strand, within EX28DRAFT_0198 at 153.230 kb on - strand, within EX28DRAFT_0198 at 153.233 kb on + strand, within EX28DRAFT_0198 at 153.233 kb on + strand, within EX28DRAFT_0198 at 153.234 kb on - strand, within EX28DRAFT_0198 at 153.234 kb on - strand, within EX28DRAFT_0198 at 153.360 kb on + strand, within EX28DRAFT_0198 at 153.361 kb on - strand, within EX28DRAFT_0198 at 153.689 kb on + strand, within EX28DRAFT_0198 at 153.689 kb on + strand, within EX28DRAFT_0198 at 153.690 kb on - strand, within EX28DRAFT_0198 at 153.690 kb on - strand, within EX28DRAFT_0198 at 153.803 kb on + strand, within EX28DRAFT_0198 at 153.951 kb on + strand, within EX28DRAFT_0198 at 154.097 kb on + strand, within EX28DRAFT_0198 at 154.098 kb on - strand, within EX28DRAFT_0198 at 154.100 kb on + strand, within EX28DRAFT_0198 at 154.101 kb on - strand, within EX28DRAFT_0198 at 154.352 kb on + strand, within EX28DRAFT_0198 at 154.352 kb on + strand, within EX28DRAFT_0198 at 154.353 kb on - strand, within EX28DRAFT_0198 at 154.353 kb on - strand, within EX28DRAFT_0198 at 154.353 kb on - strand, within EX28DRAFT_0198 at 154.477 kb on + strand, within EX28DRAFT_0198 at 154.478 kb on - strand, within EX28DRAFT_0198 at 154.603 kb on + strand, within EX28DRAFT_0198 at 154.636 kb on + strand at 154.645 kb on + strand at 154.676 kb on + strand at 154.716 kb on + strand at 154.784 kb on - strand at 154.836 kb on - strand at 154.895 kb on + strand at 154.896 kb on - strand at 154.896 kb on - strand at 154.896 kb on - strand at 154.967 kb on + strand at 155.169 kb on - strand, within EX28DRAFT_0199 at 155.391 kb on - strand, within EX28DRAFT_0199
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 151,644 - EX28DRAFT_0197 0.34 +0.5 151,644 - EX28DRAFT_0197 0.34 +0.1 151,648 - EX28DRAFT_0197 0.35 +1.1 151,688 + EX28DRAFT_0197 0.39 -0.2 151,688 + EX28DRAFT_0197 0.39 -0.2 151,689 - EX28DRAFT_0197 0.39 -2.3 151,689 - EX28DRAFT_0197 0.39 +0.2 151,724 + EX28DRAFT_0197 0.43 -0.8 151,724 + EX28DRAFT_0197 0.43 +0.6 151,725 - EX28DRAFT_0197 0.43 -0.4 151,725 - EX28DRAFT_0197 0.43 -1.0 151,897 - EX28DRAFT_0197 0.61 -0.3 151,897 - EX28DRAFT_0197 0.61 -1.1 151,897 - EX28DRAFT_0197 0.61 +0.1 151,945 - EX28DRAFT_0197 0.66 -0.5 152,035 - EX28DRAFT_0197 0.75 -0.1 152,099 + EX28DRAFT_0197 0.82 +0.5 152,158 + EX28DRAFT_0197 0.88 +1.8 152,268 + -0.1 152,269 - +0.4 152,276 + +0.4 152,277 - -0.0 152,404 - +0.2 152,406 - +0.6 152,484 + -0.2 152,484 + -0.1 152,519 - +0.7 152,519 - +0.8 152,554 + +0.5 152,555 - -0.4 152,736 - -1.0 152,736 - -0.2 152,845 - EX28DRAFT_0198 0.13 +0.1 152,990 + EX28DRAFT_0198 0.19 -0.0 152,990 + EX28DRAFT_0198 0.19 -0.9 152,991 - EX28DRAFT_0198 0.19 -0.8 152,991 - EX28DRAFT_0198 0.19 +1.6 153,230 - EX28DRAFT_0198 0.29 +0.4 153,233 + EX28DRAFT_0198 0.30 +1.3 153,233 + EX28DRAFT_0198 0.30 -0.0 153,234 - EX28DRAFT_0198 0.30 +0.9 153,234 - EX28DRAFT_0198 0.30 +0.6 153,360 + EX28DRAFT_0198 0.35 -2.7 153,361 - EX28DRAFT_0198 0.35 +0.2 153,689 + EX28DRAFT_0198 0.50 +0.4 153,689 + EX28DRAFT_0198 0.50 +0.0 153,690 - EX28DRAFT_0198 0.50 +0.0 153,690 - EX28DRAFT_0198 0.50 +1.6 153,803 + EX28DRAFT_0198 0.55 -0.1 153,951 + EX28DRAFT_0198 0.61 +0.0 154,097 + EX28DRAFT_0198 0.68 +0.7 154,098 - EX28DRAFT_0198 0.68 -0.2 154,100 + EX28DRAFT_0198 0.68 +0.1 154,101 - EX28DRAFT_0198 0.68 +0.7 154,352 + EX28DRAFT_0198 0.79 +0.6 154,352 + EX28DRAFT_0198 0.79 +0.3 154,353 - EX28DRAFT_0198 0.79 +0.3 154,353 - EX28DRAFT_0198 0.79 +0.3 154,353 - EX28DRAFT_0198 0.79 -0.2 154,477 + EX28DRAFT_0198 0.84 +0.0 154,478 - EX28DRAFT_0198 0.84 -3.3 154,603 + EX28DRAFT_0198 0.90 -0.7 154,636 + +0.3 154,645 + -0.8 154,676 + -0.5 154,716 + +2.6 154,784 - -1.4 154,836 - -0.7 154,895 + -0.2 154,896 - +1.1 154,896 - -0.3 154,896 - -0.4 154,967 + -0.3 155,169 - EX28DRAFT_0199 0.31 -0.4 155,391 - EX28DRAFT_0199 0.55 -0.7
Or see this region's nucleotide sequence