Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0189 and EX28DRAFT_0190 are separated by 10 nucleotides EX28DRAFT_0190 and EX28DRAFT_0191 are separated by 556 nucleotides
EX28DRAFT_0189: EX28DRAFT_0189 - succinyldiaminopimelate desuccinylase (EC 3.5.1.18), at 138,284 to 139,411
_0189
EX28DRAFT_0190: EX28DRAFT_0190 - transcriptional regulator, Spx/MgsR family, at 139,422 to 139,772
_0190
EX28DRAFT_0191: EX28DRAFT_0191 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 140,329 to 143,442
_0191
Position (kb)
139
140 Strain fitness (log2 ratio)
-2
-1
0
1 at 139.469 kb on + strand, within EX28DRAFT_0190 at 139.470 kb on - strand, within EX28DRAFT_0190 at 139.800 kb on + strand at 139.801 kb on - strand at 139.824 kb on - strand at 139.842 kb on + strand at 139.869 kb on - strand at 139.929 kb on - strand at 140.047 kb on + strand at 140.101 kb on + strand at 140.140 kb on + strand at 140.143 kb on + strand at 140.146 kb on + strand at 140.266 kb on - strand at 140.275 kb on + strand at 140.394 kb on - strand at 140.536 kb on + strand at 140.537 kb on - strand at 140.537 kb on - strand at 140.672 kb on + strand, within EX28DRAFT_0191 at 140.672 kb on + strand, within EX28DRAFT_0191 at 140.673 kb on - strand, within EX28DRAFT_0191
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 139,469 + EX28DRAFT_0190 0.13 -1.9 139,470 - EX28DRAFT_0190 0.14 +0.1 139,800 + -0.6 139,801 - +0.1 139,824 - -0.2 139,842 + +0.7 139,869 - +0.1 139,929 - +0.7 140,047 + -0.0 140,101 + +0.8 140,140 + -0.8 140,143 + -0.2 140,146 + -0.1 140,266 - -0.5 140,275 + +0.3 140,394 - -0.6 140,536 + -0.6 140,537 - +1.0 140,537 - +0.0 140,672 + EX28DRAFT_0191 0.11 +1.0 140,672 + EX28DRAFT_0191 0.11 -1.2 140,673 - EX28DRAFT_0191 0.11 +1.0
Or see this region's nucleotide sequence