Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0179 and EX28DRAFT_0180 are separated by 95 nucleotides EX28DRAFT_0180 and EX28DRAFT_0181 overlap by 1 nucleotides EX28DRAFT_0181 and EX28DRAFT_0182 are separated by 145 nucleotides
EX28DRAFT_0179: EX28DRAFT_0179 - Predicted permease, at 129,221 to 130,285
_0179
EX28DRAFT_0180: EX28DRAFT_0180 - Peroxiredoxin, at 130,381 to 130,851
_0180
EX28DRAFT_0181: EX28DRAFT_0181 - Glycine cleavage system regulatory protein, at 130,851 to 131,420
_0181
EX28DRAFT_0182: EX28DRAFT_0182 - 4-hydroxy-tetrahydrodipicolinate synthase, at 131,566 to 132,444
_0182
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1 at 129.438 kb on + strand, within EX28DRAFT_0179 at 129.671 kb on + strand, within EX28DRAFT_0179 at 129.672 kb on - strand, within EX28DRAFT_0179 at 129.714 kb on - strand, within EX28DRAFT_0179 at 129.714 kb on - strand, within EX28DRAFT_0179 at 129.714 kb on - strand, within EX28DRAFT_0179 at 129.854 kb on + strand, within EX28DRAFT_0179 at 129.855 kb on - strand, within EX28DRAFT_0179 at 129.855 kb on - strand, within EX28DRAFT_0179 at 129.855 kb on - strand, within EX28DRAFT_0179 at 130.074 kb on - strand, within EX28DRAFT_0179 at 130.082 kb on - strand, within EX28DRAFT_0179 at 130.156 kb on + strand, within EX28DRAFT_0179 at 130.157 kb on - strand, within EX28DRAFT_0179 at 130.283 kb on + strand at 130.283 kb on + strand at 130.498 kb on - strand, within EX28DRAFT_0180 at 130.555 kb on + strand, within EX28DRAFT_0180 at 130.853 kb on - strand at 130.896 kb on + strand at 130.899 kb on - strand at 130.986 kb on - strand, within EX28DRAFT_0181 at 131.055 kb on - strand, within EX28DRAFT_0181 at 131.128 kb on - strand, within EX28DRAFT_0181 at 131.268 kb on - strand, within EX28DRAFT_0181 at 131.268 kb on - strand, within EX28DRAFT_0181 at 131.270 kb on + strand, within EX28DRAFT_0181 at 131.271 kb on - strand, within EX28DRAFT_0181 at 131.316 kb on - strand, within EX28DRAFT_0181 at 131.444 kb on - strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 129,438 + EX28DRAFT_0179 0.20 +0.3 129,671 + EX28DRAFT_0179 0.42 +0.4 129,672 - EX28DRAFT_0179 0.42 +0.7 129,714 - EX28DRAFT_0179 0.46 +0.0 129,714 - EX28DRAFT_0179 0.46 +0.0 129,714 - EX28DRAFT_0179 0.46 +0.2 129,854 + EX28DRAFT_0179 0.59 +0.0 129,855 - EX28DRAFT_0179 0.60 +0.0 129,855 - EX28DRAFT_0179 0.60 -0.7 129,855 - EX28DRAFT_0179 0.60 -0.2 130,074 - EX28DRAFT_0179 0.80 -1.1 130,082 - EX28DRAFT_0179 0.81 -0.1 130,156 + EX28DRAFT_0179 0.88 +0.3 130,157 - EX28DRAFT_0179 0.88 +1.3 130,283 + +1.6 130,283 + -0.8 130,498 - EX28DRAFT_0180 0.25 -1.6 130,555 + EX28DRAFT_0180 0.37 -1.2 130,853 - +1.0 130,896 + -2.1 130,899 - -0.9 130,986 - EX28DRAFT_0181 0.24 -1.1 131,055 - EX28DRAFT_0181 0.36 -0.5 131,128 - EX28DRAFT_0181 0.49 -2.3 131,268 - EX28DRAFT_0181 0.73 -0.7 131,268 - EX28DRAFT_0181 0.73 -2.1 131,270 + EX28DRAFT_0181 0.74 -1.4 131,271 - EX28DRAFT_0181 0.74 +0.6 131,316 - EX28DRAFT_0181 0.82 +0.5 131,444 - +0.7 131,479 + +1.5 131,479 + +0.5 131,479 + +0.6 131,479 + -0.2 131,479 + -1.1 131,479 + +0.9 131,479 + -0.1 131,479 + +0.7 131,479 + +0.5 131,480 - +0.8 131,480 - +0.3 131,480 - -0.2 131,480 - -0.7 131,480 - +1.1
Or see this region's nucleotide sequence