Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0164 and EX28DRAFT_0165 are separated by 4 nucleotides EX28DRAFT_0165 and EX28DRAFT_0166 are separated by 3 nucleotides
EX28DRAFT_0164: EX28DRAFT_0164 - FOG: EAL domain, at 110,002 to 112,242
_0164
EX28DRAFT_0165: EX28DRAFT_0165 - exopolyphosphatase, at 112,247 to 113,785
_0165
EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849
_0166
Position (kb) 112
113
114 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 111.334 kb on + strand, within EX28DRAFT_0164 at 111.335 kb on - strand, within EX28DRAFT_0164 at 111.335 kb on - strand, within EX28DRAFT_0164 at 111.335 kb on - strand, within EX28DRAFT_0164 at 111.335 kb on - strand, within EX28DRAFT_0164 at 111.340 kb on + strand, within EX28DRAFT_0164 at 111.340 kb on + strand, within EX28DRAFT_0164 at 111.341 kb on - strand, within EX28DRAFT_0164 at 111.341 kb on - strand, within EX28DRAFT_0164 at 111.367 kb on + strand, within EX28DRAFT_0164 at 111.602 kb on + strand, within EX28DRAFT_0164 at 111.817 kb on + strand, within EX28DRAFT_0164 at 111.818 kb on - strand, within EX28DRAFT_0164 at 111.891 kb on - strand, within EX28DRAFT_0164 at 111.927 kb on + strand, within EX28DRAFT_0164 at 111.928 kb on - strand, within EX28DRAFT_0164 at 111.928 kb on - strand, within EX28DRAFT_0164 at 111.964 kb on + strand, within EX28DRAFT_0164 at 111.964 kb on + strand, within EX28DRAFT_0164 at 111.965 kb on - strand, within EX28DRAFT_0164 at 112.112 kb on - strand at 112.130 kb on + strand at 112.130 kb on + strand at 112.131 kb on - strand at 112.131 kb on - strand at 112.135 kb on - strand at 112.162 kb on + strand at 112.162 kb on + strand at 112.163 kb on - strand at 112.627 kb on - strand, within EX28DRAFT_0165 at 112.755 kb on + strand, within EX28DRAFT_0165 at 112.756 kb on - strand, within EX28DRAFT_0165 at 112.809 kb on + strand, within EX28DRAFT_0165 at 112.926 kb on - strand, within EX28DRAFT_0165 at 113.030 kb on - strand, within EX28DRAFT_0165 at 113.259 kb on + strand, within EX28DRAFT_0165 at 113.589 kb on - strand, within EX28DRAFT_0165 at 113.770 kb on + strand at 113.786 kb on - strand at 113.823 kb on + strand at 113.898 kb on + strand at 113.899 kb on - strand at 113.899 kb on - strand at 113.899 kb on - strand at 114.036 kb on + strand, within EX28DRAFT_0166 at 114.036 kb on + strand, within EX28DRAFT_0166 at 114.037 kb on - strand, within EX28DRAFT_0166 at 114.037 kb on - strand, within EX28DRAFT_0166 at 114.046 kb on + strand, within EX28DRAFT_0166 at 114.067 kb on + strand, within EX28DRAFT_0166 at 114.068 kb on - strand, within EX28DRAFT_0166 at 114.208 kb on - strand, within EX28DRAFT_0166 at 114.208 kb on - strand, within EX28DRAFT_0166 at 114.313 kb on - strand, within EX28DRAFT_0166 at 114.453 kb on + strand, within EX28DRAFT_0166 at 114.454 kb on - strand, within EX28DRAFT_0166 at 114.735 kb on + strand, within EX28DRAFT_0166
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 111,334 + EX28DRAFT_0164 0.59 +0.4 111,335 - EX28DRAFT_0164 0.59 +1.0 111,335 - EX28DRAFT_0164 0.59 -0.1 111,335 - EX28DRAFT_0164 0.59 +0.9 111,335 - EX28DRAFT_0164 0.59 -0.0 111,340 + EX28DRAFT_0164 0.60 +0.4 111,340 + EX28DRAFT_0164 0.60 +0.1 111,341 - EX28DRAFT_0164 0.60 +0.1 111,341 - EX28DRAFT_0164 0.60 +1.0 111,367 + EX28DRAFT_0164 0.61 -0.1 111,602 + EX28DRAFT_0164 0.71 +0.2 111,817 + EX28DRAFT_0164 0.81 +0.1 111,818 - EX28DRAFT_0164 0.81 +0.1 111,891 - EX28DRAFT_0164 0.84 +0.3 111,927 + EX28DRAFT_0164 0.86 -2.3 111,928 - EX28DRAFT_0164 0.86 +0.0 111,928 - EX28DRAFT_0164 0.86 +1.3 111,964 + EX28DRAFT_0164 0.88 +0.5 111,964 + EX28DRAFT_0164 0.88 +0.7 111,965 - EX28DRAFT_0164 0.88 +0.8 112,112 - -0.1 112,130 + +0.6 112,130 + +0.0 112,131 - +0.7 112,131 - +0.9 112,135 - +0.3 112,162 + -0.1 112,162 + +0.6 112,163 - +0.4 112,627 - EX28DRAFT_0165 0.25 -1.4 112,755 + EX28DRAFT_0165 0.33 -2.0 112,756 - EX28DRAFT_0165 0.33 +0.2 112,809 + EX28DRAFT_0165 0.37 -1.0 112,926 - EX28DRAFT_0165 0.44 -0.2 113,030 - EX28DRAFT_0165 0.51 -0.2 113,259 + EX28DRAFT_0165 0.66 -0.6 113,589 - EX28DRAFT_0165 0.87 -0.5 113,770 + -0.9 113,786 - -1.5 113,823 + -3.5 113,898 + -2.4 113,899 - -2.6 113,899 - -3.6 113,899 - -3.9 114,036 + EX28DRAFT_0166 0.12 -0.8 114,036 + EX28DRAFT_0166 0.12 -1.0 114,037 - EX28DRAFT_0166 0.12 -2.0 114,037 - EX28DRAFT_0166 0.12 -1.3 114,046 + EX28DRAFT_0166 0.12 -2.3 114,067 + EX28DRAFT_0166 0.13 -4.6 114,068 - EX28DRAFT_0166 0.14 -4.5 114,208 - EX28DRAFT_0166 0.20 -1.3 114,208 - EX28DRAFT_0166 0.20 -1.3 114,313 - EX28DRAFT_0166 0.25 -0.3 114,453 + EX28DRAFT_0166 0.32 -0.4 114,454 - EX28DRAFT_0166 0.32 -4.5 114,735 + EX28DRAFT_0166 0.46 -4.4
Or see this region's nucleotide sequence