Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0151 and EX28DRAFT_0152 are separated by 11 nucleotides EX28DRAFT_0152 and EX28DRAFT_0153 are separated by 8 nucleotides
EX28DRAFT_0151: EX28DRAFT_0151 - ABC-type sugar transport system, ATPase component, at 96,842 to 98,389
_0151
EX28DRAFT_0152: EX28DRAFT_0152 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 98,401 to 99,429
_0152
EX28DRAFT_0153: EX28DRAFT_0153 - Predicted dehydrogenases and related proteins, at 99,438 to 100,571
_0153
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.408 kb on + strand, within EX28DRAFT_0151 at 97.430 kb on - strand, within EX28DRAFT_0151 at 97.434 kb on - strand, within EX28DRAFT_0151 at 97.434 kb on - strand, within EX28DRAFT_0151 at 97.725 kb on + strand, within EX28DRAFT_0151 at 97.726 kb on - strand, within EX28DRAFT_0151 at 97.726 kb on - strand, within EX28DRAFT_0151 at 97.796 kb on - strand, within EX28DRAFT_0151 at 97.850 kb on + strand, within EX28DRAFT_0151 at 98.556 kb on + strand, within EX28DRAFT_0152 at 98.587 kb on + strand, within EX28DRAFT_0152 at 98.686 kb on + strand, within EX28DRAFT_0152 at 98.964 kb on + strand, within EX28DRAFT_0152 at 98.965 kb on - strand, within EX28DRAFT_0152 at 98.970 kb on + strand, within EX28DRAFT_0152 at 99.044 kb on - strand, within EX28DRAFT_0152 at 99.116 kb on - strand, within EX28DRAFT_0152 at 99.344 kb on - strand at 99.346 kb on + strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.373 kb on - strand at 99.396 kb on + strand at 99.400 kb on + strand at 99.401 kb on - strand at 99.401 kb on - strand at 99.452 kb on + strand at 99.460 kb on + strand at 99.475 kb on - strand at 99.502 kb on - strand at 99.668 kb on + strand, within EX28DRAFT_0153 at 99.736 kb on - strand, within EX28DRAFT_0153 at 99.831 kb on + strand, within EX28DRAFT_0153 at 99.831 kb on + strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.832 kb on - strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.927 kb on + strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.928 kb on - strand, within EX28DRAFT_0153 at 99.930 kb on - strand, within EX28DRAFT_0153 at 100.231 kb on - strand, within EX28DRAFT_0153 at 100.231 kb on - strand, within EX28DRAFT_0153 at 100.296 kb on + strand, within EX28DRAFT_0153 at 100.296 kb on + strand, within EX28DRAFT_0153 at 100.297 kb on - strand, within EX28DRAFT_0153
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 97,408 + EX28DRAFT_0151 0.37 -0.3 97,430 - EX28DRAFT_0151 0.38 -0.0 97,434 - EX28DRAFT_0151 0.38 +0.4 97,434 - EX28DRAFT_0151 0.38 -3.2 97,725 + EX28DRAFT_0151 0.57 +0.3 97,726 - EX28DRAFT_0151 0.57 -0.7 97,726 - EX28DRAFT_0151 0.57 +0.4 97,796 - EX28DRAFT_0151 0.62 +0.2 97,850 + EX28DRAFT_0151 0.65 -1.3 98,556 + EX28DRAFT_0152 0.15 -0.8 98,587 + EX28DRAFT_0152 0.18 +0.1 98,686 + EX28DRAFT_0152 0.28 -0.2 98,964 + EX28DRAFT_0152 0.55 -0.1 98,965 - EX28DRAFT_0152 0.55 +0.3 98,970 + EX28DRAFT_0152 0.55 +1.3 99,044 - EX28DRAFT_0152 0.62 +1.1 99,116 - EX28DRAFT_0152 0.69 +0.8 99,344 - +0.2 99,346 + -1.4 99,369 - +0.7 99,369 - +2.0 99,369 - -0.0 99,373 - -0.8 99,396 + -1.5 99,400 + -1.3 99,401 - -0.4 99,401 - +0.7 99,452 + -0.5 99,460 + -0.7 99,475 - -0.5 99,502 - -0.4 99,668 + EX28DRAFT_0153 0.20 -0.8 99,736 - EX28DRAFT_0153 0.26 -0.9 99,831 + EX28DRAFT_0153 0.35 +0.6 99,831 + EX28DRAFT_0153 0.35 -0.3 99,832 - EX28DRAFT_0153 0.35 -0.3 99,832 - EX28DRAFT_0153 0.35 +0.3 99,832 - EX28DRAFT_0153 0.35 +0.8 99,927 + EX28DRAFT_0153 0.43 +0.2 99,927 + EX28DRAFT_0153 0.43 -0.2 99,927 + EX28DRAFT_0153 0.43 +0.6 99,927 + EX28DRAFT_0153 0.43 -1.1 99,927 + EX28DRAFT_0153 0.43 -0.9 99,927 + EX28DRAFT_0153 0.43 +0.3 99,928 - EX28DRAFT_0153 0.43 -0.3 99,928 - EX28DRAFT_0153 0.43 -0.8 99,928 - EX28DRAFT_0153 0.43 +0.6 99,930 - EX28DRAFT_0153 0.43 +0.1 100,231 - EX28DRAFT_0153 0.70 +0.3 100,231 - EX28DRAFT_0153 0.70 -0.1 100,296 + EX28DRAFT_0153 0.76 -0.0 100,296 + EX28DRAFT_0153 0.76 -0.4 100,297 - EX28DRAFT_0153 0.76 +0.4
Or see this region's nucleotide sequence