Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0145 and EX28DRAFT_0146 are separated by 82 nucleotides EX28DRAFT_0146 and EX28DRAFT_0147 are separated by 292 nucleotides
EX28DRAFT_0145: EX28DRAFT_0145 - Protein of unknown function (DUF1641), at 89,576 to 89,893
_0145
EX28DRAFT_0146: EX28DRAFT_0146 - transcriptional regulator, RpiR family, at 89,976 to 90,809
_0146
EX28DRAFT_0147: EX28DRAFT_0147 - methylmalonic acid semialdehyde dehydrogenase, at 91,102 to 92,607
_0147
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 88.991 kb on + strand at 89.017 kb on - strand at 89.035 kb on + strand at 89.036 kb on - strand at 89.047 kb on + strand at 89.047 kb on + strand at 89.069 kb on - strand at 89.079 kb on - strand at 89.271 kb on + strand at 89.271 kb on + strand at 89.288 kb on + strand at 89.289 kb on - strand at 89.293 kb on - strand at 89.293 kb on - strand at 89.347 kb on + strand at 89.369 kb on + strand at 89.398 kb on + strand at 89.399 kb on - strand at 89.435 kb on + strand at 89.436 kb on - strand at 89.523 kb on - strand at 89.528 kb on + strand at 89.546 kb on + strand at 89.546 kb on + strand at 89.547 kb on - strand at 89.548 kb on + strand at 89.549 kb on - strand at 89.741 kb on - strand, within EX28DRAFT_0145 at 89.840 kb on - strand, within EX28DRAFT_0145 at 89.925 kb on + strand at 89.925 kb on + strand at 89.943 kb on + strand at 89.943 kb on + strand at 89.944 kb on - strand at 89.944 kb on - strand at 89.961 kb on - strand at 89.981 kb on + strand at 89.981 kb on + strand at 90.320 kb on - strand, within EX28DRAFT_0146 at 90.329 kb on - strand, within EX28DRAFT_0146 at 90.341 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.368 kb on - strand, within EX28DRAFT_0146 at 90.547 kb on + strand, within EX28DRAFT_0146 at 90.832 kb on - strand at 91.054 kb on + strand at 91.080 kb on + strand at 91.080 kb on + strand at 91.215 kb on + strand at 91.215 kb on + strand at 91.802 kb on - strand, within EX28DRAFT_0147
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 88,991 + +0.0 89,017 - +2.2 89,035 + -1.1 89,036 - +0.2 89,047 + -0.0 89,047 + +0.3 89,069 - +1.2 89,079 - +1.3 89,271 + +0.5 89,271 + +0.5 89,288 + -0.7 89,289 - +1.2 89,293 - +0.1 89,293 - +0.1 89,347 + -0.5 89,369 + +0.8 89,398 + +0.3 89,399 - -1.6 89,435 + +0.2 89,436 - -0.5 89,523 - -1.5 89,528 + -0.2 89,546 + +2.0 89,546 + +0.3 89,547 - -0.1 89,548 + -0.0 89,549 - -0.1 89,741 - EX28DRAFT_0145 0.52 -1.6 89,840 - EX28DRAFT_0145 0.83 +0.2 89,925 + +0.2 89,925 + +0.5 89,943 + +0.3 89,943 + +0.2 89,944 - -0.1 89,944 - -0.3 89,961 - +0.1 89,981 + -0.7 89,981 + -1.6 90,320 - EX28DRAFT_0146 0.41 +0.6 90,329 - EX28DRAFT_0146 0.42 -0.0 90,341 + EX28DRAFT_0146 0.44 +0.8 90,367 + EX28DRAFT_0146 0.47 -1.5 90,367 + EX28DRAFT_0146 0.47 -1.8 90,367 + EX28DRAFT_0146 0.47 -1.0 90,368 - EX28DRAFT_0146 0.47 -0.4 90,547 + EX28DRAFT_0146 0.68 -1.2 90,832 - +0.3 91,054 + -0.1 91,080 + +1.5 91,080 + +0.3 91,215 + +0.2 91,215 + +0.7 91,802 - EX28DRAFT_0147 0.46 +0.5
Or see this region's nucleotide sequence