Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0134 and EX28DRAFT_0135 are separated by 55 nucleotides EX28DRAFT_0135 and EX28DRAFT_0136 overlap by 4 nucleotides EX28DRAFT_0136 and EX28DRAFT_0137 are separated by 0 nucleotides
EX28DRAFT_0134: EX28DRAFT_0134 - amino acid/peptide transporter (Peptide:H+ symporter), bacterial, at 78,291 to 79,835
_0134
EX28DRAFT_0135: EX28DRAFT_0135 - replication restart DNA helicase PriA, at 79,891 to 80,112
_0135
EX28DRAFT_0136: EX28DRAFT_0136 - hypothetical protein, at 80,109 to 80,459
_0136
EX28DRAFT_0137: EX28DRAFT_0137 - Thermolysin metallopeptidase, alpha-helical domain/Thermolysin metallopeptidase, catalytic domain, at 80,460 to 81,479
_0137
Position (kb) 79
80
81 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 78.922 kb on - strand, within EX28DRAFT_0134 at 79.117 kb on - strand, within EX28DRAFT_0134 at 79.117 kb on - strand, within EX28DRAFT_0134 at 79.125 kb on + strand, within EX28DRAFT_0134 at 79.184 kb on + strand, within EX28DRAFT_0134 at 79.264 kb on - strand, within EX28DRAFT_0134 at 79.355 kb on + strand, within EX28DRAFT_0134 at 79.356 kb on - strand, within EX28DRAFT_0134 at 79.890 kb on + strand at 79.890 kb on + strand at 79.890 kb on + strand at 79.891 kb on - strand at 79.891 kb on - strand at 79.891 kb on - strand at 79.962 kb on + strand, within EX28DRAFT_0135 at 79.963 kb on - strand, within EX28DRAFT_0135 at 79.963 kb on - strand, within EX28DRAFT_0135 at 79.965 kb on + strand, within EX28DRAFT_0135 at 80.009 kb on + strand, within EX28DRAFT_0135 at 80.009 kb on + strand, within EX28DRAFT_0135 at 80.010 kb on - strand, within EX28DRAFT_0135 at 80.018 kb on + strand, within EX28DRAFT_0135 at 80.018 kb on + strand, within EX28DRAFT_0135 at 80.022 kb on - strand, within EX28DRAFT_0135 at 80.070 kb on + strand, within EX28DRAFT_0135 at 80.070 kb on + strand, within EX28DRAFT_0135 at 80.071 kb on - strand, within EX28DRAFT_0135 at 80.076 kb on + strand, within EX28DRAFT_0135 at 80.110 kb on + strand at 80.393 kb on + strand, within EX28DRAFT_0136 at 80.461 kb on + strand at 80.461 kb on + strand at 80.462 kb on - strand at 80.462 kb on - strand at 80.605 kb on + strand, within EX28DRAFT_0137 at 80.662 kb on + strand, within EX28DRAFT_0137 at 80.890 kb on + strand, within EX28DRAFT_0137 at 80.891 kb on - strand, within EX28DRAFT_0137 at 80.956 kb on + strand, within EX28DRAFT_0137 at 81.040 kb on - strand, within EX28DRAFT_0137 at 81.109 kb on + strand, within EX28DRAFT_0137
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 78,922 - EX28DRAFT_0134 0.41 +0.4 79,117 - EX28DRAFT_0134 0.53 +1.0 79,117 - EX28DRAFT_0134 0.53 -2.8 79,125 + EX28DRAFT_0134 0.54 -0.6 79,184 + EX28DRAFT_0134 0.58 -2.0 79,264 - EX28DRAFT_0134 0.63 -3.9 79,355 + EX28DRAFT_0134 0.69 +1.0 79,356 - EX28DRAFT_0134 0.69 +0.4 79,890 + +0.2 79,890 + -0.1 79,890 + -0.6 79,891 - +0.2 79,891 - -0.5 79,891 - -0.2 79,962 + EX28DRAFT_0135 0.32 +0.0 79,963 - EX28DRAFT_0135 0.32 +0.4 79,963 - EX28DRAFT_0135 0.32 +0.5 79,965 + EX28DRAFT_0135 0.33 -0.3 80,009 + EX28DRAFT_0135 0.53 -0.8 80,009 + EX28DRAFT_0135 0.53 -2.9 80,010 - EX28DRAFT_0135 0.54 -0.8 80,018 + EX28DRAFT_0135 0.57 +0.8 80,018 + EX28DRAFT_0135 0.57 +0.3 80,022 - EX28DRAFT_0135 0.59 +0.5 80,070 + EX28DRAFT_0135 0.81 +0.2 80,070 + EX28DRAFT_0135 0.81 -1.6 80,071 - EX28DRAFT_0135 0.81 +0.2 80,076 + EX28DRAFT_0135 0.83 -0.7 80,110 + +1.5 80,393 + EX28DRAFT_0136 0.81 +1.2 80,461 + +0.4 80,461 + -0.3 80,462 - +0.4 80,462 - +0.4 80,605 + EX28DRAFT_0137 0.14 -1.0 80,662 + EX28DRAFT_0137 0.20 +0.2 80,890 + EX28DRAFT_0137 0.42 -0.6 80,891 - EX28DRAFT_0137 0.42 +1.1 80,956 + EX28DRAFT_0137 0.49 -0.3 81,040 - EX28DRAFT_0137 0.57 +0.5 81,109 + EX28DRAFT_0137 0.64 +0.1
Or see this region's nucleotide sequence