Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0126 and EX28DRAFT_0127 are separated by 293 nucleotides EX28DRAFT_0127 and EX28DRAFT_0128 are separated by 26 nucleotides
EX28DRAFT_0126: EX28DRAFT_0126 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 69,610 to 70,776
_0126
EX28DRAFT_0127: EX28DRAFT_0127 - Uncharacterized protein conserved in bacteria, at 71,070 to 72,083
_0127
EX28DRAFT_0128: EX28DRAFT_0128 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3), at 72,110 to 73,228
_0128
Position (kb)
71
72
73 Strain fitness (log2 ratio)
-2
-1
0
1 at 70.113 kb on - strand, within EX28DRAFT_0126 at 70.254 kb on + strand, within EX28DRAFT_0126 at 70.255 kb on - strand, within EX28DRAFT_0126 at 70.255 kb on - strand, within EX28DRAFT_0126 at 70.533 kb on + strand, within EX28DRAFT_0126 at 70.534 kb on - strand, within EX28DRAFT_0126 at 70.584 kb on + strand, within EX28DRAFT_0126 at 70.653 kb on + strand, within EX28DRAFT_0126 at 70.725 kb on + strand at 70.740 kb on + strand at 70.740 kb on + strand at 70.741 kb on - strand at 70.779 kb on - strand at 70.800 kb on - strand at 70.800 kb on - strand at 70.818 kb on - strand at 70.864 kb on + strand at 70.865 kb on - strand at 70.894 kb on + strand at 70.898 kb on + strand at 70.898 kb on + strand at 70.918 kb on - strand at 70.963 kb on + strand at 70.963 kb on + strand at 70.963 kb on + strand at 70.963 kb on + strand at 70.964 kb on - strand at 70.964 kb on - strand at 70.964 kb on - strand at 71.052 kb on + strand at 71.498 kb on + strand, within EX28DRAFT_0127 at 71.498 kb on + strand, within EX28DRAFT_0127 at 71.501 kb on + strand, within EX28DRAFT_0127 at 71.501 kb on + strand, within EX28DRAFT_0127 at 71.504 kb on + strand, within EX28DRAFT_0127 at 71.720 kb on + strand, within EX28DRAFT_0127 at 71.730 kb on - strand, within EX28DRAFT_0127 at 71.805 kb on - strand, within EX28DRAFT_0127 at 71.885 kb on + strand, within EX28DRAFT_0127 at 71.950 kb on - strand, within EX28DRAFT_0127 at 72.032 kb on + strand at 72.032 kb on + strand at 72.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 70,113 - EX28DRAFT_0126 0.43 +0.1 70,254 + EX28DRAFT_0126 0.55 -0.8 70,255 - EX28DRAFT_0126 0.55 +0.2 70,255 - EX28DRAFT_0126 0.55 -0.9 70,533 + EX28DRAFT_0126 0.79 +0.5 70,534 - EX28DRAFT_0126 0.79 +1.2 70,584 + EX28DRAFT_0126 0.83 -0.5 70,653 + EX28DRAFT_0126 0.89 -2.3 70,725 + -0.2 70,740 + +0.1 70,740 + +1.2 70,741 - -2.2 70,779 - +0.6 70,800 - +0.6 70,800 - +1.6 70,818 - +0.1 70,864 + -1.6 70,865 - +1.0 70,894 + +0.6 70,898 + +0.3 70,898 + +0.5 70,918 - +1.4 70,963 + +0.3 70,963 + -0.0 70,963 + +0.9 70,963 + +0.3 70,964 - +0.5 70,964 - +0.8 70,964 - +1.2 71,052 + +0.8 71,498 + EX28DRAFT_0127 0.42 +0.8 71,498 + EX28DRAFT_0127 0.42 -1.5 71,501 + EX28DRAFT_0127 0.43 +0.8 71,501 + EX28DRAFT_0127 0.43 +0.6 71,504 + EX28DRAFT_0127 0.43 +0.6 71,720 + EX28DRAFT_0127 0.64 +1.1 71,730 - EX28DRAFT_0127 0.65 +0.1 71,805 - EX28DRAFT_0127 0.72 +0.8 71,885 + EX28DRAFT_0127 0.80 +0.9 71,950 - EX28DRAFT_0127 0.87 +0.0 72,032 + +0.8 72,032 + +0.6 72,081 + +1.2
Or see this region's nucleotide sequence