Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0117 and EX28DRAFT_0118 are separated by 78 nucleotides EX28DRAFT_0118 and EX28DRAFT_0119 are separated by 17 nucleotides EX28DRAFT_0119 and EX28DRAFT_0120 overlap by 1 nucleotides EX28DRAFT_0120 and EX28DRAFT_0121 are separated by 90 nucleotides
EX28DRAFT_0117: EX28DRAFT_0117 - Leucyl aminopeptidase, at 54,495 to 55,781
_0117
EX28DRAFT_0118: EX28DRAFT_0118 - SseB protein C-terminal domain/SseB protein N-terminal domain, at 55,860 to 56,636
_0118
EX28DRAFT_0119: EX28DRAFT_0119 - transcriptional regulator, RpiR family, at 56,654 to 57,424
_0119
EX28DRAFT_0120: EX28DRAFT_0120 - Rhodanese-related sulfurtransferase, at 57,424 to 58,272
_0120
EX28DRAFT_0121: EX28DRAFT_0121 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 58,363 to 59,730
_0121
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 55.656 kb on + strand at 55.780 kb on - strand at 55.859 kb on + strand at 55.882 kb on + strand at 56.201 kb on + strand, within EX28DRAFT_0118 at 56.388 kb on - strand, within EX28DRAFT_0118 at 56.513 kb on + strand, within EX28DRAFT_0118 at 56.555 kb on + strand, within EX28DRAFT_0118 at 56.858 kb on - strand, within EX28DRAFT_0119 at 56.935 kb on + strand, within EX28DRAFT_0119 at 56.962 kb on + strand, within EX28DRAFT_0119 at 57.120 kb on + strand, within EX28DRAFT_0119 at 57.120 kb on + strand, within EX28DRAFT_0119 at 57.120 kb on + strand, within EX28DRAFT_0119 at 57.121 kb on - strand, within EX28DRAFT_0119 at 57.121 kb on - strand, within EX28DRAFT_0119 at 57.367 kb on - strand at 57.367 kb on - strand at 57.425 kb on + strand at 57.580 kb on + strand, within EX28DRAFT_0120 at 57.581 kb on - strand, within EX28DRAFT_0120 at 57.581 kb on - strand, within EX28DRAFT_0120 at 57.684 kb on + strand, within EX28DRAFT_0120 at 57.684 kb on + strand, within EX28DRAFT_0120 at 57.684 kb on + strand, within EX28DRAFT_0120 at 57.685 kb on - strand, within EX28DRAFT_0120 at 57.685 kb on - strand, within EX28DRAFT_0120 at 57.685 kb on - strand, within EX28DRAFT_0120 at 57.993 kb on - strand, within EX28DRAFT_0120 at 57.993 kb on - strand, within EX28DRAFT_0120 at 57.993 kb on - strand, within EX28DRAFT_0120 at 58.259 kb on + strand at 58.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 55,656 + -0.5 55,780 - -1.7 55,859 + -0.2 55,882 + +1.3 56,201 + EX28DRAFT_0118 0.44 -0.1 56,388 - EX28DRAFT_0118 0.68 +0.2 56,513 + EX28DRAFT_0118 0.84 -1.3 56,555 + EX28DRAFT_0118 0.89 -2.1 56,858 - EX28DRAFT_0119 0.26 -0.7 56,935 + EX28DRAFT_0119 0.36 -1.9 56,962 + EX28DRAFT_0119 0.40 -0.3 57,120 + EX28DRAFT_0119 0.60 -1.9 57,120 + EX28DRAFT_0119 0.60 -0.3 57,120 + EX28DRAFT_0119 0.60 +0.2 57,121 - EX28DRAFT_0119 0.61 -0.4 57,121 - EX28DRAFT_0119 0.61 -0.2 57,367 - -0.3 57,367 - +0.4 57,425 + -0.7 57,580 + EX28DRAFT_0120 0.18 -0.3 57,581 - EX28DRAFT_0120 0.18 +0.3 57,581 - EX28DRAFT_0120 0.18 +0.1 57,684 + EX28DRAFT_0120 0.31 +0.8 57,684 + EX28DRAFT_0120 0.31 -2.1 57,684 + EX28DRAFT_0120 0.31 +0.0 57,685 - EX28DRAFT_0120 0.31 +1.3 57,685 - EX28DRAFT_0120 0.31 +0.2 57,685 - EX28DRAFT_0120 0.31 -0.4 57,993 - EX28DRAFT_0120 0.67 -0.8 57,993 - EX28DRAFT_0120 0.67 +1.7 57,993 - EX28DRAFT_0120 0.67 +0.2 58,259 + -0.7 58,260 - +0.2
Or see this region's nucleotide sequence