Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0105

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0103 and EX28DRAFT_0104 are separated by 125 nucleotidesEX28DRAFT_0104 and EX28DRAFT_0105 overlap by 10 nucleotidesEX28DRAFT_0105 and EX28DRAFT_0106 are separated by 59 nucleotidesEX28DRAFT_0106 and EX28DRAFT_0107 are separated by 131 nucleotides EX28DRAFT_0103: EX28DRAFT_0103 - Transcriptional antiterminator, at 43,914 to 45,191 _0103 EX28DRAFT_0104: EX28DRAFT_0104 - ABC-type uncharacterized transport system, periplasmic component, at 45,317 to 45,955 _0104 EX28DRAFT_0105: EX28DRAFT_0105 - ABC-type uncharacterized transport system, permease component, at 45,946 to 46,926 _0105 EX28DRAFT_0106: EX28DRAFT_0106 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 46,986 to 47,789 _0106 EX28DRAFT_0107: EX28DRAFT_0107 - RNA methyltransferase, TrmH family, group 1, at 47,921 to 48,646 _0107 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 45.040 kb on - strand, within EX28DRAFT_0103at 45.040 kb on - strand, within EX28DRAFT_0103at 45.041 kb on + strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.084 kb on + strandat 45.085 kb on - strandat 45.085 kb on - strandat 45.227 kb on - strandat 45.398 kb on - strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.495 kb on - strand, within EX28DRAFT_0104at 45.495 kb on - strand, within EX28DRAFT_0104at 45.745 kb on + strand, within EX28DRAFT_0104at 45.745 kb on + strand, within EX28DRAFT_0104at 45.746 kb on - strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.750 kb on - strand, within EX28DRAFT_0104at 45.750 kb on - strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.786 kb on + strand, within EX28DRAFT_0104at 45.787 kb on - strand, within EX28DRAFT_0104at 45.787 kb on - strand, within EX28DRAFT_0104at 45.832 kb on + strand, within EX28DRAFT_0104at 45.832 kb on + strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.942 kb on + strandat 45.943 kb on - strandat 46.080 kb on + strand, within EX28DRAFT_0105at 46.081 kb on - strand, within EX28DRAFT_0105at 46.182 kb on + strand, within EX28DRAFT_0105at 46.183 kb on - strand, within EX28DRAFT_0105at 46.183 kb on - strand, within EX28DRAFT_0105at 46.186 kb on + strand, within EX28DRAFT_0105at 46.187 kb on - strand, within EX28DRAFT_0105at 46.284 kb on + strand, within EX28DRAFT_0105at 46.285 kb on - strand, within EX28DRAFT_0105at 46.352 kb on + strand, within EX28DRAFT_0105at 46.353 kb on - strand, within EX28DRAFT_0105at 46.605 kb on + strand, within EX28DRAFT_0105at 46.660 kb on - strand, within EX28DRAFT_0105at 46.660 kb on - strand, within EX28DRAFT_0105at 46.794 kb on + strand, within EX28DRAFT_0105at 46.929 kb on + strandat 46.974 kb on + strandat 46.979 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
45,040 - EX28DRAFT_0103 0.88 -1.1
45,040 - EX28DRAFT_0103 0.88 +0.2
45,041 + EX28DRAFT_0103 0.88 -0.3
45,042 - EX28DRAFT_0103 0.88 -0.7
45,042 - EX28DRAFT_0103 0.88 -0.2
45,042 - EX28DRAFT_0103 0.88 +0.1
45,042 - EX28DRAFT_0103 0.88 +1.4
45,084 + +1.4
45,085 - -0.4
45,085 - +0.1
45,227 - +2.0
45,398 - EX28DRAFT_0104 0.13 +0.3
45,494 + EX28DRAFT_0104 0.28 -0.4
45,494 + EX28DRAFT_0104 0.28 -0.7
45,494 + EX28DRAFT_0104 0.28 -0.9
45,494 + EX28DRAFT_0104 0.28 -0.8
45,494 + EX28DRAFT_0104 0.28 +0.5
45,495 - EX28DRAFT_0104 0.28 -0.4
45,495 - EX28DRAFT_0104 0.28 +0.2
45,745 + EX28DRAFT_0104 0.67 -1.9
45,745 + EX28DRAFT_0104 0.67 -0.3
45,746 - EX28DRAFT_0104 0.67 -0.2
45,749 + EX28DRAFT_0104 0.68 -0.3
45,749 + EX28DRAFT_0104 0.68 -0.0
45,749 + EX28DRAFT_0104 0.68 +2.2
45,749 + EX28DRAFT_0104 0.68 -0.4
45,749 + EX28DRAFT_0104 0.68 +0.7
45,750 - EX28DRAFT_0104 0.68 -0.6
45,750 - EX28DRAFT_0104 0.68 -0.0
45,752 + EX28DRAFT_0104 0.68 +0.9
45,752 + EX28DRAFT_0104 0.68 -0.6
45,752 + EX28DRAFT_0104 0.68 +0.0
45,753 - EX28DRAFT_0104 0.68 -0.1
45,753 - EX28DRAFT_0104 0.68 -0.5
45,753 - EX28DRAFT_0104 0.68 +1.0
45,786 + EX28DRAFT_0104 0.73 +1.2
45,787 - EX28DRAFT_0104 0.74 +0.5
45,787 - EX28DRAFT_0104 0.74 -0.4
45,832 + EX28DRAFT_0104 0.81 +0.3
45,832 + EX28DRAFT_0104 0.81 -0.9
45,833 - EX28DRAFT_0104 0.81 -0.5
45,833 - EX28DRAFT_0104 0.81 -1.6
45,833 - EX28DRAFT_0104 0.81 -0.1
45,833 - EX28DRAFT_0104 0.81 -2.5
45,833 - EX28DRAFT_0104 0.81 +0.3
45,942 + -1.1
45,943 - -1.1
46,080 + EX28DRAFT_0105 0.14 -0.4
46,081 - EX28DRAFT_0105 0.14 -0.2
46,182 + EX28DRAFT_0105 0.24 +1.1
46,183 - EX28DRAFT_0105 0.24 +1.8
46,183 - EX28DRAFT_0105 0.24 +0.4
46,186 + EX28DRAFT_0105 0.24 +0.5
46,187 - EX28DRAFT_0105 0.25 -0.4
46,284 + EX28DRAFT_0105 0.34 +0.7
46,285 - EX28DRAFT_0105 0.35 +0.4
46,352 + EX28DRAFT_0105 0.41 +0.2
46,353 - EX28DRAFT_0105 0.41 +0.2
46,605 + EX28DRAFT_0105 0.67 +0.4
46,660 - EX28DRAFT_0105 0.73 +0.2
46,660 - EX28DRAFT_0105 0.73 -0.6
46,794 + EX28DRAFT_0105 0.86 +1.5
46,929 + +0.1
46,974 + +0.4
46,979 - +0.0

Or see this region's nucleotide sequence