Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0099 and EX28DRAFT_0100 are separated by 54 nucleotides EX28DRAFT_0100 and EX28DRAFT_0101 are separated by 149 nucleotides EX28DRAFT_0101 and EX28DRAFT_0102 are separated by 116 nucleotides
EX28DRAFT_0099: EX28DRAFT_0099 - Glycine/serine hydroxymethyltransferase, at 40,286 to 41,539
_0099
EX28DRAFT_0100: EX28DRAFT_0100 - Predicted membrane protein, at 41,594 to 42,016
_0100
EX28DRAFT_0101: EX28DRAFT_0101 - Protein of unknown function (DUF2569), at 42,166 to 42,657
_0101
EX28DRAFT_0102: EX28DRAFT_0102 - Nucleoside H+ symporter, at 42,774 to 43,919
_0102
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.537 kb on + strand at 41.537 kb on + strand at 41.538 kb on - strand at 41.538 kb on - strand at 41.660 kb on - strand, within EX28DRAFT_0100 at 41.660 kb on - strand, within EX28DRAFT_0100 at 41.671 kb on + strand, within EX28DRAFT_0100 at 41.674 kb on - strand, within EX28DRAFT_0100 at 41.680 kb on + strand, within EX28DRAFT_0100 at 41.713 kb on + strand, within EX28DRAFT_0100 at 41.752 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.759 kb on + strand, within EX28DRAFT_0100 at 41.759 kb on + strand, within EX28DRAFT_0100 at 41.839 kb on + strand, within EX28DRAFT_0100 at 41.881 kb on + strand, within EX28DRAFT_0100 at 41.882 kb on - strand, within EX28DRAFT_0100 at 41.882 kb on - strand, within EX28DRAFT_0100 at 41.882 kb on - strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.884 kb on - strand, within EX28DRAFT_0100 at 41.884 kb on - strand, within EX28DRAFT_0100 at 41.884 kb on - strand, within EX28DRAFT_0100 at 41.889 kb on - strand, within EX28DRAFT_0100 at 42.005 kb on + strand at 42.005 kb on + strand at 42.006 kb on - strand at 42.016 kb on + strand at 42.016 kb on + strand at 42.046 kb on + strand at 42.053 kb on - strand at 42.116 kb on - strand at 42.166 kb on - strand at 42.201 kb on + strand at 42.201 kb on + strand at 42.201 kb on + strand at 42.201 kb on + strand at 42.265 kb on + strand, within EX28DRAFT_0101 at 42.325 kb on + strand, within EX28DRAFT_0101 at 42.326 kb on - strand, within EX28DRAFT_0101 at 42.366 kb on + strand, within EX28DRAFT_0101 at 42.444 kb on + strand, within EX28DRAFT_0101 at 42.485 kb on - strand, within EX28DRAFT_0101 at 42.488 kb on + strand, within EX28DRAFT_0101 at 42.489 kb on - strand, within EX28DRAFT_0101 at 42.504 kb on + strand, within EX28DRAFT_0101 at 42.650 kb on + strand at 42.651 kb on - strand at 42.685 kb on + strand at 42.713 kb on + strand at 42.714 kb on - strand at 42.714 kb on - strand at 42.748 kb on + strand at 42.749 kb on - strand at 42.827 kb on + strand at 42.828 kb on - strand at 43.015 kb on + strand, within EX28DRAFT_0102 at 43.016 kb on - strand, within EX28DRAFT_0102
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 41,537 + -0.1 41,537 + -0.5 41,538 - -0.1 41,538 - -0.0 41,660 - EX28DRAFT_0100 0.16 -1.1 41,660 - EX28DRAFT_0100 0.16 +0.3 41,671 + EX28DRAFT_0100 0.18 -1.0 41,674 - EX28DRAFT_0100 0.19 -0.2 41,680 + EX28DRAFT_0100 0.20 -0.9 41,713 + EX28DRAFT_0100 0.28 -0.1 41,752 + EX28DRAFT_0100 0.37 -0.7 41,754 + EX28DRAFT_0100 0.38 -0.3 41,754 + EX28DRAFT_0100 0.38 -0.1 41,754 + EX28DRAFT_0100 0.38 +0.8 41,754 + EX28DRAFT_0100 0.38 +0.2 41,754 + EX28DRAFT_0100 0.38 +0.0 41,755 - EX28DRAFT_0100 0.38 +0.2 41,755 - EX28DRAFT_0100 0.38 +2.4 41,755 - EX28DRAFT_0100 0.38 +1.1 41,755 - EX28DRAFT_0100 0.38 -0.6 41,759 + EX28DRAFT_0100 0.39 -0.5 41,759 + EX28DRAFT_0100 0.39 -2.1 41,839 + EX28DRAFT_0100 0.58 -0.5 41,881 + EX28DRAFT_0100 0.68 -0.2 41,882 - EX28DRAFT_0100 0.68 -0.5 41,882 - EX28DRAFT_0100 0.68 +0.4 41,882 - EX28DRAFT_0100 0.68 +0.2 41,883 + EX28DRAFT_0100 0.68 -0.2 41,883 + EX28DRAFT_0100 0.68 -0.1 41,883 + EX28DRAFT_0100 0.68 +0.2 41,883 + EX28DRAFT_0100 0.68 -1.3 41,883 + EX28DRAFT_0100 0.68 +1.4 41,884 - EX28DRAFT_0100 0.69 -0.3 41,884 - EX28DRAFT_0100 0.69 -0.3 41,884 - EX28DRAFT_0100 0.69 +0.6 41,889 - EX28DRAFT_0100 0.70 -0.6 42,005 + +0.3 42,005 + -0.8 42,006 - -0.2 42,016 + -0.5 42,016 + +0.3 42,046 + -0.3 42,053 - -0.3 42,116 - -0.3 42,166 - -2.3 42,201 + +0.0 42,201 + +0.1 42,201 + -0.1 42,201 + -1.5 42,265 + EX28DRAFT_0101 0.20 -2.6 42,325 + EX28DRAFT_0101 0.32 -0.1 42,326 - EX28DRAFT_0101 0.33 +0.2 42,366 + EX28DRAFT_0101 0.41 -0.1 42,444 + EX28DRAFT_0101 0.57 +0.4 42,485 - EX28DRAFT_0101 0.65 +0.2 42,488 + EX28DRAFT_0101 0.65 +0.1 42,489 - EX28DRAFT_0101 0.66 -0.3 42,504 + EX28DRAFT_0101 0.69 +0.2 42,650 + -1.1 42,651 - +0.0 42,685 + +1.1 42,713 + +0.0 42,714 - +0.5 42,714 - -0.6 42,748 + +0.1 42,749 - +0.6 42,827 + -0.8 42,828 - +1.7 43,015 + EX28DRAFT_0102 0.21 +0.1 43,016 - EX28DRAFT_0102 0.21 +0.2
Or see this region's nucleotide sequence