Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0086 and EX28DRAFT_0087 are separated by 11 nucleotides EX28DRAFT_0087 and EX28DRAFT_0088 are separated by 3 nucleotides EX28DRAFT_0088 and EX28DRAFT_0089 are separated by 24 nucleotides
EX28DRAFT_0086: EX28DRAFT_0086 - N-acetylmuramic acid 6-phosphate etherase, at 25,217 to 26,110
_0086
EX28DRAFT_0087: EX28DRAFT_0087 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 26,122 to 27,483
_0087
EX28DRAFT_0088: EX28DRAFT_0088 - haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB, at 27,487 to 28,122
_0088
EX28DRAFT_0089: EX28DRAFT_0089 - Cytosine/adenosine deaminases, at 28,147 to 28,686
_0089
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1
2 at 25.319 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.416 kb on - strand, within EX28DRAFT_0086 at 25.598 kb on - strand, within EX28DRAFT_0086 at 25.652 kb on + strand, within EX28DRAFT_0086 at 25.653 kb on - strand, within EX28DRAFT_0086 at 25.834 kb on + strand, within EX28DRAFT_0086 at 25.874 kb on + strand, within EX28DRAFT_0086 at 26.108 kb on + strand at 26.121 kb on + strand at 26.431 kb on + strand, within EX28DRAFT_0087 at 26.499 kb on + strand, within EX28DRAFT_0087 at 26.576 kb on - strand, within EX28DRAFT_0087 at 27.088 kb on + strand, within EX28DRAFT_0087 at 27.090 kb on + strand, within EX28DRAFT_0087 at 27.315 kb on + strand, within EX28DRAFT_0087 at 27.316 kb on - strand, within EX28DRAFT_0087 at 27.316 kb on - strand, within EX28DRAFT_0087 at 27.319 kb on + strand, within EX28DRAFT_0087 at 27.403 kb on + strand at 27.403 kb on + strand at 27.404 kb on - strand at 27.410 kb on + strand at 27.416 kb on - strand at 27.420 kb on - strand at 27.420 kb on - strand at 27.420 kb on - strand at 27.420 kb on - strand at 27.482 kb on - strand at 27.549 kb on + strand at 27.549 kb on + strand at 27.549 kb on + strand at 27.550 kb on - strand at 27.621 kb on - strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.697 kb on - strand, within EX28DRAFT_0088 at 27.805 kb on + strand, within EX28DRAFT_0088 at 28.120 kb on + strand at 28.131 kb on - strand at 28.131 kb on - strand at 28.143 kb on + strand at 28.144 kb on - strand at 28.144 kb on - strand at 28.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 25,319 - EX28DRAFT_0086 0.11 +0.5 25,416 - EX28DRAFT_0086 0.22 +2.1 25,416 - EX28DRAFT_0086 0.22 -0.2 25,416 - EX28DRAFT_0086 0.22 -0.4 25,598 - EX28DRAFT_0086 0.43 +0.5 25,652 + EX28DRAFT_0086 0.49 +0.3 25,653 - EX28DRAFT_0086 0.49 -0.6 25,834 + EX28DRAFT_0086 0.69 -0.1 25,874 + EX28DRAFT_0086 0.73 -0.0 26,108 + -0.2 26,121 + -0.7 26,431 + EX28DRAFT_0087 0.23 -0.4 26,499 + EX28DRAFT_0087 0.28 +1.0 26,576 - EX28DRAFT_0087 0.33 +0.2 27,088 + EX28DRAFT_0087 0.71 -0.0 27,090 + EX28DRAFT_0087 0.71 +1.2 27,315 + EX28DRAFT_0087 0.88 +0.8 27,316 - EX28DRAFT_0087 0.88 +0.6 27,316 - EX28DRAFT_0087 0.88 -0.1 27,319 + EX28DRAFT_0087 0.88 +0.0 27,403 + -0.7 27,403 + -0.8 27,404 - +1.2 27,410 + -0.5 27,416 - +0.4 27,420 - +0.0 27,420 - +0.2 27,420 - +1.2 27,420 - +0.2 27,482 - -0.8 27,549 + -0.3 27,549 + +0.1 27,549 + +0.3 27,550 - -0.1 27,621 - EX28DRAFT_0088 0.21 -0.4 27,696 + EX28DRAFT_0088 0.33 -0.5 27,696 + EX28DRAFT_0088 0.33 +0.2 27,696 + EX28DRAFT_0088 0.33 +0.1 27,696 + EX28DRAFT_0088 0.33 -0.1 27,697 - EX28DRAFT_0088 0.33 +0.6 27,805 + EX28DRAFT_0088 0.50 -0.2 28,120 + +1.0 28,131 - -0.0 28,131 - -1.3 28,143 + -1.4 28,144 - -0.2 28,144 - -1.1 28,146 - -0.1
Or see this region's nucleotide sequence