Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_R0010

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00662 and CCNA_00663 are separated by 43 nucleotidesCCNA_00663 and CCNA_R0010 are separated by 421 nucleotidesCCNA_R0010 and CCNA_00664 are separated by 86 nucleotides CCNA_00662: CCNA_00662 - hypothetical protein, at 719,217 to 719,564 _00662 CCNA_00663: CCNA_00663 - bacterial apoptosis endonuclease BapE, at 719,608 to 719,943 _00663 CCNA_R0010: CCNA_R0010 - tRNA-Arg, at 720,365 to 720,441 _R0010 CCNA_00664: CCNA_00664 - C4-dicarboxylate transport protein, at 720,528 to 721,781 _00664 Position (kb) 720 721Strain fitness (log2 ratio) -2 -1 0 1 2at 719.378 kb on + strand, within CCNA_00662at 719.380 kb on + strand, within CCNA_00662at 719.386 kb on - strand, within CCNA_00662at 719.386 kb on - strand, within CCNA_00662at 719.400 kb on + strand, within CCNA_00662at 719.432 kb on + strand, within CCNA_00662at 719.432 kb on + strand, within CCNA_00662at 719.432 kb on + strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.473 kb on + strand, within CCNA_00662at 719.474 kb on - strand, within CCNA_00662at 719.482 kb on + strand, within CCNA_00662at 719.484 kb on - strand, within CCNA_00662at 719.536 kb on - strandat 719.568 kb on + strandat 719.596 kb on + strandat 719.596 kb on + strandat 719.629 kb on + strandat 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.695 kb on + strand, within CCNA_00663at 719.700 kb on - strand, within CCNA_00663at 719.700 kb on - strand, within CCNA_00663at 719.711 kb on - strand, within CCNA_00663at 719.713 kb on + strand, within CCNA_00663at 719.713 kb on + strand, within CCNA_00663at 719.726 kb on + strand, within CCNA_00663at 719.744 kb on - strand, within CCNA_00663at 719.782 kb on - strand, within CCNA_00663at 719.818 kb on + strand, within CCNA_00663at 719.841 kb on + strand, within CCNA_00663at 719.846 kb on + strand, within CCNA_00663at 719.846 kb on + strand, within CCNA_00663at 719.846 kb on + strand, within CCNA_00663at 719.853 kb on + strand, within CCNA_00663at 719.859 kb on - strand, within CCNA_00663at 719.859 kb on - strand, within CCNA_00663at 719.868 kb on + strand, within CCNA_00663at 719.872 kb on + strand, within CCNA_00663at 719.926 kb on - strandat 719.970 kb on - strandat 719.970 kb on - strandat 719.973 kb on + strandat 719.973 kb on + strandat 719.973 kb on + strandat 719.973 kb on + strandat 719.973 kb on + strandat 719.981 kb on - strandat 719.981 kb on - strandat 719.981 kb on - strandat 719.981 kb on - strandat 719.981 kb on - strandat 720.023 kb on + strandat 720.034 kb on + strandat 720.034 kb on + strandat 720.034 kb on + strandat 720.042 kb on + strandat 720.050 kb on - strandat 720.120 kb on + strandat 720.120 kb on + strandat 720.128 kb on - strandat 720.128 kb on - strandat 720.128 kb on - strandat 720.142 kb on - strandat 720.209 kb on - strandat 720.252 kb on + strandat 720.256 kb on + strandat 720.262 kb on + strandat 720.283 kb on - strandat 720.318 kb on + strandat 720.327 kb on + strandat 720.335 kb on - strandat 720.341 kb on + strandat 720.341 kb on + strandat 720.341 kb on + strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.411 kb on + strand, within CCNA_R0010at 720.411 kb on + strand, within CCNA_R0010at 720.416 kb on + strand, within CCNA_R0010at 720.416 kb on + strand, within CCNA_R0010at 720.416 kb on + strand, within CCNA_R0010at 720.416 kb on + strand, within CCNA_R0010at 720.416 kb on + strand, within CCNA_R0010at 720.416 kb on + strand, within CCNA_R0010at 720.419 kb on - strand, within CCNA_R0010at 720.421 kb on + strand, within CCNA_R0010at 720.421 kb on + strand, within CCNA_R0010at 720.421 kb on + strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.429 kb on - strand, within CCNA_R0010at 720.432 kb on + strand, within CCNA_R0010at 720.462 kb on - strandat 720.476 kb on - strandat 720.507 kb on + strandat 720.517 kb on - strandat 720.559 kb on + strandat 720.565 kb on + strandat 720.565 kb on + strandat 720.565 kb on + strandat 720.581 kb on - strandat 720.586 kb on - strandat 720.599 kb on + strandat 720.607 kb on - strandat 720.644 kb on + strandat 720.671 kb on + strand, within CCNA_00664at 720.679 kb on - strand, within CCNA_00664at 720.679 kb on - strand, within CCNA_00664at 720.725 kb on - strand, within CCNA_00664at 720.741 kb on + strand, within CCNA_00664at 720.746 kb on + strand, within CCNA_00664at 720.761 kb on + strand, within CCNA_00664at 720.769 kb on - strand, within CCNA_00664at 720.769 kb on - strand, within CCNA_00664at 720.770 kb on - strand, within CCNA_00664at 720.814 kb on - strand, within CCNA_00664at 720.822 kb on + strand, within CCNA_00664at 720.844 kb on + strand, within CCNA_00664at 720.872 kb on + strand, within CCNA_00664at 720.881 kb on + strand, within CCNA_00664at 720.885 kb on - strand, within CCNA_00664at 720.896 kb on + strand, within CCNA_00664at 720.935 kb on - strand, within CCNA_00664at 721.004 kb on - strand, within CCNA_00664at 721.039 kb on + strand, within CCNA_00664at 721.047 kb on - strand, within CCNA_00664at 721.065 kb on - strand, within CCNA_00664at 721.090 kb on + strand, within CCNA_00664at 721.096 kb on + strand, within CCNA_00664at 721.115 kb on + strand, within CCNA_00664at 721.128 kb on + strand, within CCNA_00664at 721.145 kb on + strand, within CCNA_00664at 721.177 kb on - strand, within CCNA_00664at 721.237 kb on + strand, within CCNA_00664at 721.239 kb on + strand, within CCNA_00664at 721.247 kb on - strand, within CCNA_00664at 721.283 kb on - strand, within CCNA_00664at 721.292 kb on + strand, within CCNA_00664at 721.292 kb on + strand, within CCNA_00664at 721.298 kb on - strand, within CCNA_00664at 721.360 kb on - strand, within CCNA_00664at 721.412 kb on - strand, within CCNA_00664at 721.412 kb on - strand, within CCNA_00664

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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719,378 + CCNA_00662 0.46 -0.8
719,380 + CCNA_00662 0.47 +0.4
719,386 - CCNA_00662 0.49 +0.1
719,386 - CCNA_00662 0.49 +0.4
719,400 + CCNA_00662 0.53 -0.3
719,432 + CCNA_00662 0.62 +0.3
719,432 + CCNA_00662 0.62 -0.3
719,432 + CCNA_00662 0.62 +1.0
719,456 - CCNA_00662 0.69 -0.8
719,456 - CCNA_00662 0.69 +0.3
719,456 - CCNA_00662 0.69 +1.6
719,456 - CCNA_00662 0.69 -0.2
719,473 + CCNA_00662 0.74 +0.8
719,474 - CCNA_00662 0.74 +0.5
719,482 + CCNA_00662 0.76 -1.1
719,484 - CCNA_00662 0.77 +0.9
719,536 - +1.4
719,568 + -0.2
719,596 + -0.4
719,596 + +0.1
719,629 + -1.2
719,655 + CCNA_00663 0.14 +0.3
719,655 + CCNA_00663 0.14 -1.1
719,655 + CCNA_00663 0.14 -1.3
719,660 + CCNA_00663 0.15 +0.7
719,660 + CCNA_00663 0.15 -0.8
719,660 + CCNA_00663 0.15 -0.1
719,663 - CCNA_00663 0.16 +0.6
719,663 - CCNA_00663 0.16 -0.2
719,695 + CCNA_00663 0.26 +0.1
719,700 - CCNA_00663 0.27 -0.7
719,700 - CCNA_00663 0.27 -1.1
719,711 - CCNA_00663 0.31 -0.1
719,713 + CCNA_00663 0.31 -0.8
719,713 + CCNA_00663 0.31 -1.9
719,726 + CCNA_00663 0.35 -1.3
719,744 - CCNA_00663 0.40 +0.3
719,782 - CCNA_00663 0.52 -0.6
719,818 + CCNA_00663 0.62 -0.1
719,841 + CCNA_00663 0.69 -0.3
719,846 + CCNA_00663 0.71 -1.3
719,846 + CCNA_00663 0.71 -0.1
719,846 + CCNA_00663 0.71 -0.9
719,853 + CCNA_00663 0.73 -0.4
719,859 - CCNA_00663 0.75 -1.2
719,859 - CCNA_00663 0.75 +0.3
719,868 + CCNA_00663 0.77 -1.0
719,872 + CCNA_00663 0.79 -0.3
719,926 - -0.2
719,970 - -0.6
719,970 - -0.2
719,973 + -1.2
719,973 + -0.1
719,973 + -0.6
719,973 + -1.4
719,973 + -0.5
719,981 - +0.6
719,981 - +0.3
719,981 - -0.2
719,981 - +0.1
719,981 - +0.7
720,023 + -0.6
720,034 + -0.1
720,034 + -1.5
720,034 + -1.2
720,042 + -0.4
720,050 - +0.6
720,120 + -0.9
720,120 + +0.2
720,128 - +0.4
720,128 - -0.5
720,128 - -0.1
720,142 - -1.1
720,209 - -1.8
720,252 + +0.2
720,256 + +0.6
720,262 + -1.1
720,283 - -0.8
720,318 + +0.1
720,327 + +0.4
720,335 - -1.2
720,341 + +0.3
720,341 + -0.9
720,341 + +0.1
720,349 - +0.1
720,349 - +0.7
720,349 - -0.5
720,349 - +0.6
720,349 - +0.6
720,411 + CCNA_R0010 0.60 -1.8
720,411 + CCNA_R0010 0.60 -1.6
720,416 + CCNA_R0010 0.66 -2.0
720,416 + CCNA_R0010 0.66 -2.5
720,416 + CCNA_R0010 0.66 -0.2
720,416 + CCNA_R0010 0.66 +0.9
720,416 + CCNA_R0010 0.66 -0.3
720,416 + CCNA_R0010 0.66 -0.3
720,419 - CCNA_R0010 0.70 -0.3
720,421 + CCNA_R0010 0.73 -0.4
720,421 + CCNA_R0010 0.73 -1.3
720,421 + CCNA_R0010 0.73 -2.4
720,424 - CCNA_R0010 0.77 -0.5
720,424 - CCNA_R0010 0.77 -1.1
720,424 - CCNA_R0010 0.77 +1.7
720,424 - CCNA_R0010 0.77 +0.2
720,424 - CCNA_R0010 0.77 +0.9
720,424 - CCNA_R0010 0.77 +1.1
720,424 - CCNA_R0010 0.77 +0.5
720,424 - CCNA_R0010 0.77 -2.3
720,429 - CCNA_R0010 0.83 +0.3
720,432 + CCNA_R0010 0.87 -1.5
720,462 - +0.5
720,476 - +0.3
720,507 + -0.3
720,517 - -1.1
720,559 + -1.0
720,565 + -1.4
720,565 + -0.6
720,565 + +0.1
720,581 - +0.4
720,586 - +0.0
720,599 + -0.2
720,607 - -0.1
720,644 + -1.2
720,671 + CCNA_00664 0.11 -0.4
720,679 - CCNA_00664 0.12 +1.3
720,679 - CCNA_00664 0.12 +1.9
720,725 - CCNA_00664 0.16 -0.6
720,741 + CCNA_00664 0.17 +0.8
720,746 + CCNA_00664 0.17 +0.1
720,761 + CCNA_00664 0.19 +1.3
720,769 - CCNA_00664 0.19 -1.7
720,769 - CCNA_00664 0.19 +0.2
720,770 - CCNA_00664 0.19 -1.6
720,814 - CCNA_00664 0.23 -0.7
720,822 + CCNA_00664 0.23 -0.7
720,844 + CCNA_00664 0.25 +0.1
720,872 + CCNA_00664 0.27 +0.0
720,881 + CCNA_00664 0.28 +1.4
720,885 - CCNA_00664 0.28 +0.5
720,896 + CCNA_00664 0.29 +0.0
720,935 - CCNA_00664 0.32 -0.3
721,004 - CCNA_00664 0.38 +0.2
721,039 + CCNA_00664 0.41 +1.0
721,047 - CCNA_00664 0.41 +0.0
721,065 - CCNA_00664 0.43 -1.0
721,090 + CCNA_00664 0.45 +0.1
721,096 + CCNA_00664 0.45 +0.2
721,115 + CCNA_00664 0.47 -0.7
721,128 + CCNA_00664 0.48 -0.5
721,145 + CCNA_00664 0.49 -0.2
721,177 - CCNA_00664 0.52 -0.3
721,237 + CCNA_00664 0.57 +0.2
721,239 + CCNA_00664 0.57 +0.6
721,247 - CCNA_00664 0.57 -0.0
721,283 - CCNA_00664 0.60 -0.4
721,292 + CCNA_00664 0.61 -0.1
721,292 + CCNA_00664 0.61 +0.0
721,298 - CCNA_00664 0.61 -1.1
721,360 - CCNA_00664 0.66 +1.1
721,412 - CCNA_00664 0.70 -1.2
721,412 - CCNA_00664 0.70 -0.3

Or see this region's nucleotide sequence