Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_R0001

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00073 and CCNA_R0001 are separated by 41 nucleotidesCCNA_R0001 and CCNA_00074 are separated by 251 nucleotides CCNA_00073: CCNA_00073 - HemY domain membrane protein, at 74,573 to 76,108 _00073 CCNA_R0001: CCNA_R0001 - tRNA-Thr, at 76,150 to 76,225 _R0001 CCNA_00074: CCNA_00074 - multifunctional fatty acid oxidation complex subunit alpha FadJ, at 76,477 to 78,678 _00074 Position (kb) 76 77Strain fitness (log2 ratio) -1 0 1at 75.151 kb on + strand, within CCNA_00073at 75.225 kb on - strand, within CCNA_00073at 75.304 kb on + strand, within CCNA_00073at 75.373 kb on + strand, within CCNA_00073at 75.383 kb on - strand, within CCNA_00073at 75.387 kb on - strand, within CCNA_00073at 75.417 kb on - strand, within CCNA_00073at 75.436 kb on + strand, within CCNA_00073at 75.436 kb on + strand, within CCNA_00073at 75.462 kb on - strand, within CCNA_00073at 75.473 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.520 kb on - strand, within CCNA_00073at 75.529 kb on + strand, within CCNA_00073at 75.563 kb on + strand, within CCNA_00073at 75.651 kb on - strand, within CCNA_00073at 75.663 kb on - strand, within CCNA_00073at 75.716 kb on + strand, within CCNA_00073at 75.716 kb on + strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.776 kb on + strand, within CCNA_00073at 75.784 kb on + strand, within CCNA_00073at 75.848 kb on - strand, within CCNA_00073at 75.956 kb on + strandat 75.956 kb on + strandat 75.998 kb on + strandat 76.059 kb on + strandat 76.278 kb on + strandat 76.278 kb on + strandat 76.285 kb on - strandat 76.286 kb on - strandat 76.436 kb on + strandat 76.462 kb on + strandat 76.465 kb on - strandat 76.469 kb on + strandat 76.471 kb on - strandat 76.474 kb on + strandat 76.487 kb on + strandat 76.487 kb on + strandat 76.487 kb on + strandat 76.495 kb on - strandat 76.512 kb on + strandat 76.520 kb on + strandat 76.559 kb on - strandat 76.600 kb on + strandat 76.608 kb on - strandat 76.620 kb on - strandat 76.650 kb on - strandat 76.670 kb on + strandat 76.670 kb on + strandat 76.675 kb on + strandat 76.675 kb on + strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.683 kb on - strandat 76.725 kb on + strand, within CCNA_00074at 76.725 kb on + strand, within CCNA_00074at 76.733 kb on - strand, within CCNA_00074at 76.835 kb on - strand, within CCNA_00074at 76.857 kb on - strand, within CCNA_00074at 76.886 kb on + strand, within CCNA_00074at 76.992 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.011 kb on + strand, within CCNA_00074at 77.019 kb on - strand, within CCNA_00074at 77.099 kb on - strand, within CCNA_00074at 77.120 kb on - strand, within CCNA_00074at 77.121 kb on - strand, within CCNA_00074at 77.151 kb on - strand, within CCNA_00074at 77.161 kb on - strand, within CCNA_00074at 77.178 kb on - strand, within CCNA_00074

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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75,151 + CCNA_00073 0.38 -0.1
75,225 - CCNA_00073 0.42 +0.8
75,304 + CCNA_00073 0.48 +1.1
75,373 + CCNA_00073 0.52 +0.5
75,383 - CCNA_00073 0.53 +0.5
75,387 - CCNA_00073 0.53 -0.1
75,417 - CCNA_00073 0.55 +0.5
75,436 + CCNA_00073 0.56 +0.4
75,436 + CCNA_00073 0.56 +0.7
75,462 - CCNA_00073 0.58 +0.3
75,473 - CCNA_00073 0.59 +0.2
75,520 - CCNA_00073 0.62 +1.4
75,520 - CCNA_00073 0.62 +1.1
75,520 - CCNA_00073 0.62 -1.4
75,520 - CCNA_00073 0.62 +0.1
75,529 + CCNA_00073 0.62 +0.9
75,563 + CCNA_00073 0.64 -0.1
75,651 - CCNA_00073 0.70 -0.1
75,663 - CCNA_00073 0.71 -0.4
75,716 + CCNA_00073 0.74 +0.6
75,716 + CCNA_00073 0.74 +0.4
75,776 + CCNA_00073 0.78 +0.7
75,776 + CCNA_00073 0.78 +1.1
75,784 + CCNA_00073 0.79 +0.4
75,848 - CCNA_00073 0.83 +0.3
75,956 + +1.3
75,956 + -0.3
75,998 + -0.0
76,059 + -0.5
76,278 + -0.6
76,278 + +0.1
76,285 - -0.0
76,286 - -0.6
76,436 + +0.6
76,462 + -0.3
76,465 - -0.3
76,469 + +0.1
76,471 - +0.3
76,474 + +0.8
76,487 + -0.0
76,487 + +0.5
76,487 + +0.3
76,495 - +0.3
76,512 + -0.1
76,520 + -0.5
76,559 - -0.5
76,600 + +0.2
76,608 - +1.4
76,620 - +1.1
76,650 - +0.5
76,670 + +0.2
76,670 + +0.2
76,675 + -1.0
76,675 + -1.0
76,683 - -0.4
76,683 - +0.1
76,683 - +0.6
76,725 + CCNA_00074 0.11 +0.8
76,725 + CCNA_00074 0.11 +0.1
76,733 - CCNA_00074 0.12 -1.4
76,835 - CCNA_00074 0.16 +0.3
76,857 - CCNA_00074 0.17 +0.7
76,886 + CCNA_00074 0.19 +0.6
76,992 + CCNA_00074 0.23 +0.4
77,011 + CCNA_00074 0.24 +0.3
77,011 + CCNA_00074 0.24 +1.0
77,011 + CCNA_00074 0.24 +0.7
77,011 + CCNA_00074 0.24 +0.6
77,011 + CCNA_00074 0.24 -0.9
77,019 - CCNA_00074 0.25 +1.3
77,099 - CCNA_00074 0.28 -0.4
77,120 - CCNA_00074 0.29 -0.6
77,121 - CCNA_00074 0.29 +0.3
77,151 - CCNA_00074 0.31 +1.1
77,161 - CCNA_00074 0.31 +0.0
77,178 - CCNA_00074 0.32 +1.5

Or see this region's nucleotide sequence