Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00062 and CCNA_03913 are separated by 78 nucleotides CCNA_03913 and CCNA_00063 are separated by 41 nucleotides
CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361
_00062
CCNA_03913: CCNA_03913 - hypothetical protein, at 64,440 to 64,487
_03913
CCNA_00063: CCNA_00063 - MviN-family integral membrane protein, at 64,529 to 66,091
_00063
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 64.356 kb on + strand at 64.364 kb on - strand at 64.437 kb on + strand at 64.445 kb on - strand, within CCNA_03913 at 64.450 kb on - strand, within CCNA_03913 at 64.450 kb on - strand, within CCNA_03913 at 64.502 kb on + strand at 64.510 kb on - strand at 64.512 kb on + strand at 64.515 kb on - strand at 64.515 kb on - strand at 64.517 kb on + strand at 64.520 kb on - strand at 64.520 kb on - strand at 64.550 kb on + strand at 64.552 kb on + strand at 64.557 kb on + strand at 64.557 kb on + strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.565 kb on - strand at 64.573 kb on + strand at 64.581 kb on - strand at 64.605 kb on + strand at 64.605 kb on + strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.613 kb on - strand at 64.649 kb on + strand at 64.660 kb on + strand at 64.661 kb on + strand at 64.668 kb on - strand at 64.696 kb on - strand, within CCNA_00063
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 64,356 + -0.7 64,364 - +0.4 64,437 + -0.9 64,445 - CCNA_03913 0.10 -0.2 64,450 - CCNA_03913 0.21 -1.1 64,450 - CCNA_03913 0.21 -1.2 64,502 + +1.6 64,510 - -2.1 64,512 + -0.0 64,515 - -0.6 64,515 - +0.7 64,517 + -0.4 64,520 - -1.9 64,520 - +1.6 64,550 + -1.8 64,552 + -1.4 64,557 + +0.5 64,557 + +0.1 64,565 - +0.3 64,565 - +0.5 64,565 - +0.5 64,565 - -0.4 64,565 - +0.4 64,573 + -0.3 64,581 - +0.1 64,605 + +0.5 64,605 + +0.3 64,613 - -0.0 64,613 - +0.3 64,613 - -0.2 64,613 - +0.1 64,613 - -0.3 64,613 - -0.1 64,613 - -0.3 64,613 - +0.6 64,613 - +0.0 64,649 + -2.1 64,660 + -0.6 64,661 + -0.5 64,668 - +0.0 64,696 - CCNA_00063 0.11 +0.1
Or see this region's nucleotide sequence