Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03859 and CCNA_03860 are separated by 73 nucleotides CCNA_03860 and CCNA_03861 overlap by 4 nucleotides CCNA_03861 and CCNA_03862 are separated by 12 nucleotides CCNA_03862 and CCNA_03863 are separated by 6 nucleotides
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535
_03860
CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185
_03861
CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818
_03862
CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235
_03863
Position (kb)
4023
4024
4025 Strain fitness (log2 ratio)
-2
-1
0
1 at 4022.560 kb on - strand, within CCNA_03859 at 4022.560 kb on - strand, within CCNA_03859 at 4022.576 kb on - strand, within CCNA_03859 at 4022.799 kb on + strand, within CCNA_03859 at 4022.936 kb on - strand at 4022.954 kb on - strand at 4022.957 kb on - strand at 4022.970 kb on + strand at 4022.987 kb on - strand at 4022.992 kb on - strand at 4022.992 kb on - strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.031 kb on + strand at 4023.181 kb on - strand, within CCNA_03860 at 4023.181 kb on - strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.211 kb on - strand, within CCNA_03860 at 4023.216 kb on + strand, within CCNA_03860 at 4023.238 kb on + strand, within CCNA_03860 at 4023.306 kb on - strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.416 kb on + strand, within CCNA_03860 at 4023.424 kb on - strand, within CCNA_03860 at 4023.523 kb on - strand at 4023.548 kb on + strand at 4023.823 kb on - strand, within CCNA_03861 at 4023.986 kb on - strand, within CCNA_03861 at 4024.021 kb on - strand, within CCNA_03861 at 4024.030 kb on + strand, within CCNA_03861 at 4024.052 kb on - strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.086 kb on - strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.112 kb on - strand, within CCNA_03861 at 4024.143 kb on - strand at 4024.182 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.205 kb on - strand at 4024.232 kb on - strand at 4024.235 kb on - strand at 4024.813 kb on + strand at 4024.917 kb on + strand, within CCNA_03863 at 4024.925 kb on - strand, within CCNA_03863 at 4024.953 kb on + strand, within CCNA_03863 at 4024.961 kb on - strand, within CCNA_03863 at 4024.970 kb on + strand, within CCNA_03863 at 4024.978 kb on - strand, within CCNA_03863 at 4025.023 kb on - strand, within CCNA_03863 at 4025.111 kb on + strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 4,022,560 - CCNA_03859 0.43 -0.7 4,022,560 - CCNA_03859 0.43 +0.3 4,022,576 - CCNA_03859 0.45 -0.3 4,022,799 + CCNA_03859 0.78 -0.3 4,022,936 - -0.5 4,022,954 - +0.3 4,022,957 - +1.1 4,022,970 + -1.1 4,022,987 - +0.3 4,022,992 - -0.1 4,022,992 - -0.6 4,023,001 + -1.3 4,023,001 + +0.4 4,023,001 + -0.9 4,023,001 + -1.0 4,023,001 + +0.4 4,023,001 + +0.2 4,023,001 + +0.0 4,023,001 + +0.6 4,023,009 - +0.3 4,023,009 - -1.6 4,023,009 - -0.5 4,023,009 - +1.7 4,023,009 - -0.6 4,023,009 - -1.1 4,023,031 + +0.3 4,023,181 - CCNA_03860 0.30 +0.1 4,023,181 - CCNA_03860 0.30 -0.4 4,023,203 + CCNA_03860 0.35 -0.4 4,023,203 + CCNA_03860 0.35 +0.5 4,023,211 - CCNA_03860 0.36 -0.5 4,023,216 + CCNA_03860 0.37 -0.3 4,023,238 + CCNA_03860 0.42 +0.9 4,023,306 - CCNA_03860 0.55 +0.0 4,023,341 + CCNA_03860 0.62 -0.7 4,023,349 - CCNA_03860 0.63 +1.4 4,023,416 + CCNA_03860 0.76 -0.5 4,023,424 - CCNA_03860 0.78 +0.3 4,023,523 - +0.0 4,023,548 + +0.3 4,023,823 - CCNA_03861 0.44 -1.0 4,023,986 - CCNA_03861 0.69 +0.1 4,024,021 - CCNA_03861 0.75 +0.3 4,024,030 + CCNA_03861 0.76 -1.6 4,024,052 - CCNA_03861 0.80 -1.5 4,024,085 + CCNA_03861 0.85 -2.5 4,024,085 + CCNA_03861 0.85 -0.3 4,024,086 - CCNA_03861 0.85 -0.3 4,024,093 - CCNA_03861 0.86 -1.4 4,024,093 - CCNA_03861 0.86 -1.0 4,024,112 - CCNA_03861 0.89 +0.7 4,024,143 - -0.5 4,024,182 + +1.4 4,024,195 + +0.3 4,024,195 + -0.7 4,024,195 + +0.6 4,024,195 + -0.3 4,024,195 + +0.2 4,024,205 - +0.5 4,024,232 - -0.2 4,024,235 - +0.3 4,024,813 + +1.3 4,024,917 + CCNA_03863 0.22 +0.8 4,024,925 - CCNA_03863 0.24 +0.7 4,024,953 + CCNA_03863 0.31 -0.4 4,024,961 - CCNA_03863 0.33 +0.7 4,024,970 + CCNA_03863 0.35 -0.2 4,024,978 - CCNA_03863 0.37 +0.7 4,025,023 - CCNA_03863 0.48 +0.6 4,025,111 + CCNA_03863 0.70 +0.5 4,025,158 - CCNA_03863 0.81 +0.2
Or see this region's nucleotide sequence