Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03861

Experiment: PYE with CHIR-090 4 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03859 and CCNA_03860 are separated by 73 nucleotidesCCNA_03860 and CCNA_03861 overlap by 4 nucleotidesCCNA_03861 and CCNA_03862 are separated by 12 nucleotidesCCNA_03862 and CCNA_03863 are separated by 6 nucleotides CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952 _03859 CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535 _03860 CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185 _03861 CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818 _03862 CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235 _03863 Position (kb) 4023 4024 4025Strain fitness (log2 ratio) -2 -1 0 1at 4022.560 kb on - strand, within CCNA_03859at 4022.560 kb on - strand, within CCNA_03859at 4022.576 kb on - strand, within CCNA_03859at 4022.799 kb on + strand, within CCNA_03859at 4022.936 kb on - strandat 4022.954 kb on - strandat 4022.957 kb on - strandat 4022.970 kb on + strandat 4022.987 kb on - strandat 4022.992 kb on - strandat 4022.992 kb on - strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.001 kb on + strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.009 kb on - strandat 4023.031 kb on + strandat 4023.181 kb on - strand, within CCNA_03860at 4023.181 kb on - strand, within CCNA_03860at 4023.203 kb on + strand, within CCNA_03860at 4023.203 kb on + strand, within CCNA_03860at 4023.211 kb on - strand, within CCNA_03860at 4023.216 kb on + strand, within CCNA_03860at 4023.238 kb on + strand, within CCNA_03860at 4023.306 kb on - strand, within CCNA_03860at 4023.341 kb on + strand, within CCNA_03860at 4023.349 kb on - strand, within CCNA_03860at 4023.416 kb on + strand, within CCNA_03860at 4023.424 kb on - strand, within CCNA_03860at 4023.523 kb on - strandat 4023.548 kb on + strandat 4023.823 kb on - strand, within CCNA_03861at 4023.986 kb on - strand, within CCNA_03861at 4024.021 kb on - strand, within CCNA_03861at 4024.030 kb on + strand, within CCNA_03861at 4024.052 kb on - strand, within CCNA_03861at 4024.085 kb on + strand, within CCNA_03861at 4024.085 kb on + strand, within CCNA_03861at 4024.086 kb on - strand, within CCNA_03861at 4024.093 kb on - strand, within CCNA_03861at 4024.093 kb on - strand, within CCNA_03861at 4024.112 kb on - strand, within CCNA_03861at 4024.143 kb on - strandat 4024.182 kb on + strandat 4024.195 kb on + strandat 4024.195 kb on + strandat 4024.195 kb on + strandat 4024.195 kb on + strandat 4024.195 kb on + strandat 4024.205 kb on - strandat 4024.232 kb on - strandat 4024.235 kb on - strandat 4024.813 kb on + strandat 4024.917 kb on + strand, within CCNA_03863at 4024.925 kb on - strand, within CCNA_03863at 4024.953 kb on + strand, within CCNA_03863at 4024.961 kb on - strand, within CCNA_03863at 4024.970 kb on + strand, within CCNA_03863at 4024.978 kb on - strand, within CCNA_03863at 4025.023 kb on - strand, within CCNA_03863at 4025.111 kb on + strand, within CCNA_03863at 4025.158 kb on - strand, within CCNA_03863

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
remove
4,022,560 - CCNA_03859 0.43 -0.7
4,022,560 - CCNA_03859 0.43 +0.3
4,022,576 - CCNA_03859 0.45 -0.3
4,022,799 + CCNA_03859 0.78 -0.3
4,022,936 - -0.5
4,022,954 - +0.3
4,022,957 - +1.1
4,022,970 + -1.1
4,022,987 - +0.3
4,022,992 - -0.1
4,022,992 - -0.6
4,023,001 + -1.3
4,023,001 + +0.4
4,023,001 + -0.9
4,023,001 + -1.0
4,023,001 + +0.4
4,023,001 + +0.2
4,023,001 + +0.0
4,023,001 + +0.6
4,023,009 - +0.3
4,023,009 - -1.6
4,023,009 - -0.5
4,023,009 - +1.7
4,023,009 - -0.6
4,023,009 - -1.1
4,023,031 + +0.3
4,023,181 - CCNA_03860 0.30 +0.1
4,023,181 - CCNA_03860 0.30 -0.4
4,023,203 + CCNA_03860 0.35 -0.4
4,023,203 + CCNA_03860 0.35 +0.5
4,023,211 - CCNA_03860 0.36 -0.5
4,023,216 + CCNA_03860 0.37 -0.3
4,023,238 + CCNA_03860 0.42 +0.9
4,023,306 - CCNA_03860 0.55 +0.0
4,023,341 + CCNA_03860 0.62 -0.7
4,023,349 - CCNA_03860 0.63 +1.4
4,023,416 + CCNA_03860 0.76 -0.5
4,023,424 - CCNA_03860 0.78 +0.3
4,023,523 - +0.0
4,023,548 + +0.3
4,023,823 - CCNA_03861 0.44 -1.0
4,023,986 - CCNA_03861 0.69 +0.1
4,024,021 - CCNA_03861 0.75 +0.3
4,024,030 + CCNA_03861 0.76 -1.6
4,024,052 - CCNA_03861 0.80 -1.5
4,024,085 + CCNA_03861 0.85 -2.5
4,024,085 + CCNA_03861 0.85 -0.3
4,024,086 - CCNA_03861 0.85 -0.3
4,024,093 - CCNA_03861 0.86 -1.4
4,024,093 - CCNA_03861 0.86 -1.0
4,024,112 - CCNA_03861 0.89 +0.7
4,024,143 - -0.5
4,024,182 + +1.4
4,024,195 + +0.3
4,024,195 + -0.7
4,024,195 + +0.6
4,024,195 + -0.3
4,024,195 + +0.2
4,024,205 - +0.5
4,024,232 - -0.2
4,024,235 - +0.3
4,024,813 + +1.3
4,024,917 + CCNA_03863 0.22 +0.8
4,024,925 - CCNA_03863 0.24 +0.7
4,024,953 + CCNA_03863 0.31 -0.4
4,024,961 - CCNA_03863 0.33 +0.7
4,024,970 + CCNA_03863 0.35 -0.2
4,024,978 - CCNA_03863 0.37 +0.7
4,025,023 - CCNA_03863 0.48 +0.6
4,025,111 + CCNA_03863 0.70 +0.5
4,025,158 - CCNA_03863 0.81 +0.2

Or see this region's nucleotide sequence