Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03781 and CCNA_03782 are separated by 183 nucleotides CCNA_03782 and CCNA_03783 overlap by 4 nucleotides CCNA_03783 and CCNA_03784 are separated by 57 nucleotides
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805
_03782
CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467
_03783
CCNA_03784: CCNA_03784 - hypothetical protein, at 3,951,525 to 3,952,418
_03784
Position (kb)
3950
3951 Strain fitness (log2 ratio)
-1
0
1
2 at 3950.024 kb on - strand at 3950.034 kb on - strand at 3950.191 kb on - strand at 3950.322 kb on - strand, within CCNA_03782 at 3950.477 kb on + strand, within CCNA_03782 at 3950.482 kb on - strand, within CCNA_03782 at 3950.500 kb on + strand, within CCNA_03782 at 3950.609 kb on + strand, within CCNA_03782 at 3950.614 kb on + strand, within CCNA_03782 at 3950.622 kb on - strand, within CCNA_03782 at 3950.794 kb on - strand at 3950.806 kb on - strand at 3950.806 kb on - strand at 3950.838 kb on + strand at 3950.851 kb on - strand at 3950.868 kb on + strand at 3951.037 kb on + strand, within CCNA_03783 at 3951.333 kb on + strand, within CCNA_03783 at 3951.360 kb on + strand, within CCNA_03783 at 3951.461 kb on + strand at 3951.464 kb on - strand at 3951.501 kb on - strand at 3951.515 kb on - strand at 3951.546 kb on + strand at 3951.554 kb on - strand at 3951.554 kb on - strand at 3951.560 kb on - strand at 3951.565 kb on - strand at 3951.580 kb on + strand at 3951.588 kb on - strand at 3951.632 kb on + strand, within CCNA_03784 at 3951.652 kb on - strand, within CCNA_03784 at 3951.657 kb on + strand, within CCNA_03784 at 3951.707 kb on + strand, within CCNA_03784 at 3951.707 kb on + strand, within CCNA_03784 at 3951.721 kb on + strand, within CCNA_03784 at 3951.721 kb on + strand, within CCNA_03784 at 3951.729 kb on - strand, within CCNA_03784 at 3951.729 kb on - strand, within CCNA_03784 at 3951.729 kb on - strand, within CCNA_03784 at 3951.734 kb on - strand, within CCNA_03784 at 3951.734 kb on - strand, within CCNA_03784 at 3951.765 kb on - strand, within CCNA_03784 at 3951.769 kb on - strand, within CCNA_03784 at 3951.779 kb on - strand, within CCNA_03784 at 3951.799 kb on + strand, within CCNA_03784
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 3,950,024 - -0.0 3,950,034 - +0.7 3,950,191 - -1.3 3,950,322 - CCNA_03782 0.21 +0.9 3,950,477 + CCNA_03782 0.47 -0.3 3,950,482 - CCNA_03782 0.47 +0.3 3,950,500 + CCNA_03782 0.50 +0.3 3,950,609 + CCNA_03782 0.68 -0.7 3,950,614 + CCNA_03782 0.69 +0.0 3,950,622 - CCNA_03782 0.70 +0.3 3,950,794 - -0.5 3,950,806 - +0.4 3,950,806 - -0.7 3,950,838 + -0.7 3,950,851 - +0.3 3,950,868 + -0.3 3,951,037 + CCNA_03783 0.35 -1.3 3,951,333 + CCNA_03783 0.80 +0.3 3,951,360 + CCNA_03783 0.84 -1.7 3,951,461 + -0.3 3,951,464 - +0.5 3,951,501 - -0.9 3,951,515 - -0.2 3,951,546 + +1.0 3,951,554 - +0.4 3,951,554 - -0.1 3,951,560 - +0.7 3,951,565 - +0.5 3,951,580 + +0.2 3,951,588 - +0.0 3,951,632 + CCNA_03784 0.12 -0.2 3,951,652 - CCNA_03784 0.14 -0.6 3,951,657 + CCNA_03784 0.15 -0.6 3,951,707 + CCNA_03784 0.20 -0.3 3,951,707 + CCNA_03784 0.20 +1.8 3,951,721 + CCNA_03784 0.22 -0.4 3,951,721 + CCNA_03784 0.22 +0.3 3,951,729 - CCNA_03784 0.23 -0.2 3,951,729 - CCNA_03784 0.23 +0.5 3,951,729 - CCNA_03784 0.23 +0.5 3,951,734 - CCNA_03784 0.23 +0.0 3,951,734 - CCNA_03784 0.23 +0.6 3,951,765 - CCNA_03784 0.27 +0.2 3,951,769 - CCNA_03784 0.27 +0.2 3,951,779 - CCNA_03784 0.28 +0.4 3,951,799 + CCNA_03784 0.31 +0.3
Or see this region's nucleotide sequence