Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03766

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03764 and CCNA_03765 are separated by 3 nucleotidesCCNA_03765 and CCNA_03766 are separated by 23 nucleotidesCCNA_03766 and CCNA_03767 are separated by 56 nucleotidesCCNA_03767 and CCNA_03768 are separated by 26 nucleotides CCNA_03764: CCNA_03764 - acyl-CoA thioesterase, at 3,932,758 to 3,933,612 _03764 CCNA_03765: CCNA_03765 - phosphohydrolase, MutT/nudix family protein, at 3,933,616 to 3,934,179 _03765 CCNA_03766: CCNA_03766 - 16S rRNA processing protein RimM, at 3,934,203 to 3,934,784 _03766 CCNA_03767: CCNA_03767 - SSU ribosomal protein S16P, at 3,934,841 to 3,935,338 _03767 CCNA_03768: CCNA_03768 - signal recognition particle GTPase, SRP, at 3,935,365 to 3,936,891 _03768 Position (kb) 3934 3935Strain fitness (log2 ratio) -2 -1 0 1at 3933.257 kb on - strand, within CCNA_03764at 3933.281 kb on - strand, within CCNA_03764at 3933.288 kb on + strand, within CCNA_03764at 3933.289 kb on + strand, within CCNA_03764at 3933.297 kb on - strand, within CCNA_03764at 3933.310 kb on + strand, within CCNA_03764at 3933.343 kb on + strand, within CCNA_03764at 3933.348 kb on + strand, within CCNA_03764at 3933.351 kb on - strand, within CCNA_03764at 3933.410 kb on - strand, within CCNA_03764at 3933.410 kb on - strand, within CCNA_03764at 3933.415 kb on - strand, within CCNA_03764at 3933.433 kb on + strand, within CCNA_03764at 3933.434 kb on + strand, within CCNA_03764at 3933.446 kb on - strand, within CCNA_03764at 3933.446 kb on - strand, within CCNA_03764at 3933.493 kb on + strand, within CCNA_03764at 3933.501 kb on - strand, within CCNA_03764at 3933.501 kb on - strand, within CCNA_03764at 3933.501 kb on - strand, within CCNA_03764at 3933.501 kb on - strand, within CCNA_03764at 3933.509 kb on + strand, within CCNA_03764at 3933.564 kb on + strandat 3933.621 kb on - strandat 3933.621 kb on - strandat 3933.622 kb on - strandat 3933.700 kb on + strand, within CCNA_03765at 3933.708 kb on - strand, within CCNA_03765at 3933.708 kb on - strand, within CCNA_03765at 3933.743 kb on + strand, within CCNA_03765at 3933.751 kb on - strand, within CCNA_03765at 3933.751 kb on - strand, within CCNA_03765at 3933.751 kb on - strand, within CCNA_03765at 3933.751 kb on - strand, within CCNA_03765at 3933.753 kb on + strand, within CCNA_03765at 3933.756 kb on + strand, within CCNA_03765at 3933.775 kb on - strand, within CCNA_03765at 3933.811 kb on - strand, within CCNA_03765at 3933.844 kb on - strand, within CCNA_03765at 3933.861 kb on + strand, within CCNA_03765at 3933.869 kb on - strand, within CCNA_03765at 3933.929 kb on - strand, within CCNA_03765at 3933.980 kb on - strand, within CCNA_03765at 3933.980 kb on - strand, within CCNA_03765at 3933.991 kb on - strand, within CCNA_03765at 3933.995 kb on + strand, within CCNA_03765at 3934.045 kb on + strand, within CCNA_03765at 3934.048 kb on - strand, within CCNA_03765at 3934.054 kb on + strand, within CCNA_03765at 3934.061 kb on + strand, within CCNA_03765at 3934.094 kb on + strand, within CCNA_03765at 3934.124 kb on - strandat 3934.129 kb on + strandat 3934.293 kb on + strand, within CCNA_03766at 3934.293 kb on + strand, within CCNA_03766at 3934.301 kb on - strand, within CCNA_03766at 3934.798 kb on - strandat 3935.015 kb on - strand, within CCNA_03767at 3935.015 kb on - strand, within CCNA_03767at 3935.419 kb on - strandat 3935.468 kb on - strandat 3935.478 kb on - strandat 3935.506 kb on - strandat 3935.557 kb on - strand, within CCNA_03768at 3935.611 kb on - strand, within CCNA_03768at 3935.611 kb on - strand, within CCNA_03768at 3935.611 kb on - strand, within CCNA_03768

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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3,933,257 - CCNA_03764 0.58 -0.0
3,933,281 - CCNA_03764 0.61 -0.0
3,933,288 + CCNA_03764 0.62 -0.2
3,933,289 + CCNA_03764 0.62 +0.4
3,933,297 - CCNA_03764 0.63 -0.3
3,933,310 + CCNA_03764 0.65 -0.0
3,933,343 + CCNA_03764 0.68 -0.3
3,933,348 + CCNA_03764 0.69 +0.3
3,933,351 - CCNA_03764 0.69 -0.2
3,933,410 - CCNA_03764 0.76 -0.5
3,933,410 - CCNA_03764 0.76 +0.0
3,933,415 - CCNA_03764 0.77 -0.1
3,933,433 + CCNA_03764 0.79 +0.7
3,933,434 + CCNA_03764 0.79 -0.5
3,933,446 - CCNA_03764 0.80 -1.4
3,933,446 - CCNA_03764 0.80 +0.6
3,933,493 + CCNA_03764 0.86 +0.6
3,933,501 - CCNA_03764 0.87 +0.5
3,933,501 - CCNA_03764 0.87 -0.4
3,933,501 - CCNA_03764 0.87 -0.1
3,933,501 - CCNA_03764 0.87 +0.4
3,933,509 + CCNA_03764 0.88 -0.1
3,933,564 + +0.6
3,933,621 - -1.1
3,933,621 - -0.3
3,933,622 - -0.0
3,933,700 + CCNA_03765 0.15 -0.5
3,933,708 - CCNA_03765 0.16 +0.0
3,933,708 - CCNA_03765 0.16 +0.1
3,933,743 + CCNA_03765 0.23 +0.3
3,933,751 - CCNA_03765 0.24 +0.6
3,933,751 - CCNA_03765 0.24 -1.0
3,933,751 - CCNA_03765 0.24 +1.1
3,933,751 - CCNA_03765 0.24 +0.6
3,933,753 + CCNA_03765 0.24 +0.1
3,933,756 + CCNA_03765 0.25 +0.6
3,933,775 - CCNA_03765 0.28 +0.5
3,933,811 - CCNA_03765 0.35 +0.1
3,933,844 - CCNA_03765 0.40 -0.2
3,933,861 + CCNA_03765 0.43 -0.4
3,933,869 - CCNA_03765 0.45 +0.9
3,933,929 - CCNA_03765 0.55 +1.3
3,933,980 - CCNA_03765 0.65 +0.2
3,933,980 - CCNA_03765 0.65 +0.4
3,933,991 - CCNA_03765 0.66 +0.4
3,933,995 + CCNA_03765 0.67 -2.1
3,934,045 + CCNA_03765 0.76 -1.1
3,934,048 - CCNA_03765 0.77 +0.4
3,934,054 + CCNA_03765 0.78 -0.6
3,934,061 + CCNA_03765 0.79 -0.7
3,934,094 + CCNA_03765 0.85 +0.1
3,934,124 - +0.1
3,934,129 + -0.3
3,934,293 + CCNA_03766 0.15 -0.5
3,934,293 + CCNA_03766 0.15 -1.1
3,934,301 - CCNA_03766 0.17 -0.9
3,934,798 - -0.1
3,935,015 - CCNA_03767 0.35 +0.0
3,935,015 - CCNA_03767 0.35 +0.8
3,935,419 - -1.3
3,935,468 - +0.1
3,935,478 - -0.7
3,935,506 - -0.5
3,935,557 - CCNA_03768 0.13 +0.5
3,935,611 - CCNA_03768 0.16 +0.1
3,935,611 - CCNA_03768 0.16 -0.6
3,935,611 - CCNA_03768 0.16 -0.0

Or see this region's nucleotide sequence