Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03020 and CCNA_03021 are separated by 9 nucleotides CCNA_03021 and CCNA_03022 overlap by 31 nucleotides
CCNA_03020: CCNA_03020 - phosphatidylinositol-specific phospholipase C1-like protein, at 3,174,508 to 3,175,635
_03020
CCNA_03021: CCNA_03021 - hypothetical protein, at 3,175,645 to 3,175,857
_03021
CCNA_03022: CCNA_03022 - PiuB-family transmembrane transporter, at 3,175,827 to 3,177,011
_03022
Position (kb)
3175
3176 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3174.649 kb on + strand, within CCNA_03020 at 3174.725 kb on - strand, within CCNA_03020 at 3174.740 kb on - strand, within CCNA_03020 at 3174.782 kb on - strand, within CCNA_03020 at 3174.816 kb on + strand, within CCNA_03020 at 3174.824 kb on - strand, within CCNA_03020 at 3174.831 kb on + strand, within CCNA_03020 at 3174.838 kb on + strand, within CCNA_03020 at 3174.868 kb on + strand, within CCNA_03020 at 3174.873 kb on + strand, within CCNA_03020 at 3174.876 kb on - strand, within CCNA_03020 at 3174.881 kb on - strand, within CCNA_03020 at 3174.881 kb on - strand, within CCNA_03020 at 3174.881 kb on - strand, within CCNA_03020 at 3174.902 kb on + strand, within CCNA_03020 at 3174.979 kb on + strand, within CCNA_03020 at 3174.986 kb on + strand, within CCNA_03020 at 3175.054 kb on + strand, within CCNA_03020 at 3175.054 kb on + strand, within CCNA_03020 at 3175.054 kb on + strand, within CCNA_03020 at 3175.059 kb on + strand, within CCNA_03020 at 3175.062 kb on - strand, within CCNA_03020 at 3175.077 kb on + strand, within CCNA_03020 at 3175.080 kb on - strand, within CCNA_03020 at 3175.084 kb on + strand, within CCNA_03020 at 3175.108 kb on + strand, within CCNA_03020 at 3175.149 kb on + strand, within CCNA_03020 at 3175.152 kb on - strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.155 kb on + strand, within CCNA_03020 at 3175.157 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.163 kb on - strand, within CCNA_03020 at 3175.170 kb on - strand, within CCNA_03020 at 3175.177 kb on + strand, within CCNA_03020 at 3175.201 kb on - strand, within CCNA_03020 at 3175.202 kb on - strand, within CCNA_03020 at 3175.260 kb on + strand, within CCNA_03020 at 3175.290 kb on + strand, within CCNA_03020 at 3175.339 kb on + strand, within CCNA_03020 at 3175.390 kb on + strand, within CCNA_03020 at 3175.397 kb on - strand, within CCNA_03020 at 3175.433 kb on - strand, within CCNA_03020 at 3175.479 kb on + strand, within CCNA_03020 at 3175.482 kb on - strand, within CCNA_03020 at 3175.489 kb on + strand, within CCNA_03020 at 3175.638 kb on + strand at 3175.667 kb on + strand, within CCNA_03021 at 3175.769 kb on - strand, within CCNA_03021 at 3175.812 kb on + strand, within CCNA_03021 at 3175.853 kb on + strand at 3175.896 kb on + strand at 3175.972 kb on + strand, within CCNA_03022 at 3175.973 kb on - strand, within CCNA_03022 at 3175.973 kb on - strand, within CCNA_03022 at 3175.974 kb on - strand, within CCNA_03022 at 3176.033 kb on + strand, within CCNA_03022 at 3176.041 kb on - strand, within CCNA_03022 at 3176.049 kb on - strand, within CCNA_03022 at 3176.076 kb on + strand, within CCNA_03022 at 3176.101 kb on + strand, within CCNA_03022 at 3176.193 kb on + strand, within CCNA_03022 at 3176.196 kb on - strand, within CCNA_03022 at 3176.206 kb on - strand, within CCNA_03022 at 3176.217 kb on + strand, within CCNA_03022 at 3176.217 kb on + strand, within CCNA_03022 at 3176.225 kb on - strand, within CCNA_03022 at 3176.225 kb on - strand, within CCNA_03022 at 3176.225 kb on - strand, within CCNA_03022 at 3176.354 kb on + strand, within CCNA_03022 at 3176.354 kb on + strand, within CCNA_03022 at 3176.360 kb on + strand, within CCNA_03022 at 3176.362 kb on - strand, within CCNA_03022 at 3176.385 kb on + strand, within CCNA_03022 at 3176.385 kb on + strand, within CCNA_03022 at 3176.448 kb on - strand, within CCNA_03022 at 3176.448 kb on - strand, within CCNA_03022 at 3176.466 kb on - strand, within CCNA_03022 at 3176.476 kb on - strand, within CCNA_03022 at 3176.479 kb on + strand, within CCNA_03022 at 3176.479 kb on + strand, within CCNA_03022 at 3176.605 kb on + strand, within CCNA_03022 at 3176.682 kb on + strand, within CCNA_03022 at 3176.682 kb on + strand, within CCNA_03022 at 3176.734 kb on + strand, within CCNA_03022 at 3176.734 kb on + strand, within CCNA_03022 at 3176.749 kb on - strand, within CCNA_03022 at 3176.749 kb on - strand, within CCNA_03022 at 3176.749 kb on - strand, within CCNA_03022 at 3176.775 kb on - strand, within CCNA_03022 at 3176.789 kb on - strand, within CCNA_03022
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 3,174,649 + CCNA_03020 0.12 -0.6 3,174,725 - CCNA_03020 0.19 +0.5 3,174,740 - CCNA_03020 0.21 -0.5 3,174,782 - CCNA_03020 0.24 +0.3 3,174,816 + CCNA_03020 0.27 -0.9 3,174,824 - CCNA_03020 0.28 -0.5 3,174,831 + CCNA_03020 0.29 +0.2 3,174,838 + CCNA_03020 0.29 -0.5 3,174,868 + CCNA_03020 0.32 +0.3 3,174,873 + CCNA_03020 0.32 +0.8 3,174,876 - CCNA_03020 0.33 +0.4 3,174,881 - CCNA_03020 0.33 +0.5 3,174,881 - CCNA_03020 0.33 -0.7 3,174,881 - CCNA_03020 0.33 +1.3 3,174,902 + CCNA_03020 0.35 +0.6 3,174,979 + CCNA_03020 0.42 +0.3 3,174,986 + CCNA_03020 0.42 +0.6 3,175,054 + CCNA_03020 0.48 +0.6 3,175,054 + CCNA_03020 0.48 -0.5 3,175,054 + CCNA_03020 0.48 +0.2 3,175,059 + CCNA_03020 0.49 +0.4 3,175,062 - CCNA_03020 0.49 +0.6 3,175,077 + CCNA_03020 0.50 -1.1 3,175,080 - CCNA_03020 0.51 +1.0 3,175,084 + CCNA_03020 0.51 -0.3 3,175,108 + CCNA_03020 0.53 -0.0 3,175,149 + CCNA_03020 0.57 -0.3 3,175,152 - CCNA_03020 0.57 -2.0 3,175,155 + CCNA_03020 0.57 +0.5 3,175,155 + CCNA_03020 0.57 -1.0 3,175,155 + CCNA_03020 0.57 -0.8 3,175,155 + CCNA_03020 0.57 -0.5 3,175,157 - CCNA_03020 0.58 +0.5 3,175,163 - CCNA_03020 0.58 +0.4 3,175,163 - CCNA_03020 0.58 -0.2 3,175,163 - CCNA_03020 0.58 +0.2 3,175,163 - CCNA_03020 0.58 +0.2 3,175,163 - CCNA_03020 0.58 -1.2 3,175,163 - CCNA_03020 0.58 +0.7 3,175,163 - CCNA_03020 0.58 +0.0 3,175,163 - CCNA_03020 0.58 +0.2 3,175,163 - CCNA_03020 0.58 -0.2 3,175,170 - CCNA_03020 0.59 +0.2 3,175,177 + CCNA_03020 0.59 +0.1 3,175,201 - CCNA_03020 0.61 +0.3 3,175,202 - CCNA_03020 0.62 +0.2 3,175,260 + CCNA_03020 0.67 +0.6 3,175,290 + CCNA_03020 0.69 -0.6 3,175,339 + CCNA_03020 0.74 -0.5 3,175,390 + CCNA_03020 0.78 -0.3 3,175,397 - CCNA_03020 0.79 +0.5 3,175,433 - CCNA_03020 0.82 -0.0 3,175,479 + CCNA_03020 0.86 -0.1 3,175,482 - CCNA_03020 0.86 -1.2 3,175,489 + CCNA_03020 0.87 -0.3 3,175,638 + +0.6 3,175,667 + CCNA_03021 0.10 -0.0 3,175,769 - CCNA_03021 0.58 +0.7 3,175,812 + CCNA_03021 0.78 -0.5 3,175,853 + -0.2 3,175,896 + +0.1 3,175,972 + CCNA_03022 0.12 -0.3 3,175,973 - CCNA_03022 0.12 +1.0 3,175,973 - CCNA_03022 0.12 +0.8 3,175,974 - CCNA_03022 0.12 +0.2 3,176,033 + CCNA_03022 0.17 -0.7 3,176,041 - CCNA_03022 0.18 +0.1 3,176,049 - CCNA_03022 0.19 +0.5 3,176,076 + CCNA_03022 0.21 -0.1 3,176,101 + CCNA_03022 0.23 -3.3 3,176,193 + CCNA_03022 0.31 -0.5 3,176,196 - CCNA_03022 0.31 +0.5 3,176,206 - CCNA_03022 0.32 +0.7 3,176,217 + CCNA_03022 0.33 +0.2 3,176,217 + CCNA_03022 0.33 -0.3 3,176,225 - CCNA_03022 0.34 +0.9 3,176,225 - CCNA_03022 0.34 -0.2 3,176,225 - CCNA_03022 0.34 +0.4 3,176,354 + CCNA_03022 0.44 +0.1 3,176,354 + CCNA_03022 0.44 +0.5 3,176,360 + CCNA_03022 0.45 +0.4 3,176,362 - CCNA_03022 0.45 +0.2 3,176,385 + CCNA_03022 0.47 +0.2 3,176,385 + CCNA_03022 0.47 -0.7 3,176,448 - CCNA_03022 0.52 +0.3 3,176,448 - CCNA_03022 0.52 +1.3 3,176,466 - CCNA_03022 0.54 +0.4 3,176,476 - CCNA_03022 0.55 +1.2 3,176,479 + CCNA_03022 0.55 +0.1 3,176,479 + CCNA_03022 0.55 -0.2 3,176,605 + CCNA_03022 0.66 -1.0 3,176,682 + CCNA_03022 0.72 -0.2 3,176,682 + CCNA_03022 0.72 +0.4 3,176,734 + CCNA_03022 0.77 -0.5 3,176,734 + CCNA_03022 0.77 +0.8 3,176,749 - CCNA_03022 0.78 +0.3 3,176,749 - CCNA_03022 0.78 +0.1 3,176,749 - CCNA_03022 0.78 +1.0 3,176,775 - CCNA_03022 0.80 +0.4 3,176,789 - CCNA_03022 0.81 +0.2
Or see this region's nucleotide sequence