Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02969

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02967 and CCNA_03902 are separated by 58 nucleotidesCCNA_03902 and CCNA_03883 overlap by 4 nucleotidesCCNA_03883 and CCNA_02969 are separated by 68 nucleotidesCCNA_02969 and CCNA_02970 are separated by 42 nucleotidesCCNA_02970 and CCNA_02971 are separated by 1 nucleotides CCNA_02967: CCNA_02967 - PAS-family sensor histidine kinase, at 3,122,780 to 3,125,179 _02967 CCNA_03902: CCNA_03902 - hypothetical protein, at 3,125,238 to 3,125,573 _03902 CCNA_03883: CCNA_03883 - hypothetical protein, at 3,125,570 to 3,125,986 _03883 CCNA_02969: CCNA_02969 - TetR-family transcriptional regulator, at 3,126,055 to 3,126,609 _02969 CCNA_02970: CCNA_02970 - putative thiol-disulfide oxidoreductase, at 3,126,652 to 3,127,023 _02970 CCNA_02971: CCNA_02971 - membrane permease, at 3,127,025 to 3,128,053 _02971 Position (kb) 3126 3127Strain fitness (log2 ratio) -2 -1 0 1 2at 3125.066 kb on + strandat 3125.081 kb on + strandat 3125.081 kb on + strandat 3125.147 kb on + strandat 3125.172 kb on - strandat 3125.187 kb on + strandat 3125.195 kb on - strandat 3125.195 kb on - strandat 3125.219 kb on - strandat 3125.229 kb on - strandat 3125.242 kb on - strandat 3125.242 kb on - strandat 3125.242 kb on - strandat 3125.244 kb on - strandat 3125.278 kb on - strand, within CCNA_03902at 3125.302 kb on + strand, within CCNA_03902at 3125.321 kb on + strand, within CCNA_03902at 3125.334 kb on - strand, within CCNA_03902at 3125.354 kb on - strand, within CCNA_03902at 3125.355 kb on - strand, within CCNA_03902at 3125.355 kb on - strand, within CCNA_03902at 3125.355 kb on - strand, within CCNA_03902at 3125.355 kb on - strand, within CCNA_03902at 3125.399 kb on - strand, within CCNA_03902at 3125.408 kb on + strand, within CCNA_03902at 3125.443 kb on + strand, within CCNA_03902at 3125.446 kb on - strand, within CCNA_03902at 3125.446 kb on - strand, within CCNA_03902at 3125.446 kb on - strand, within CCNA_03902at 3125.451 kb on - strand, within CCNA_03902at 3125.517 kb on + strand, within CCNA_03902at 3125.542 kb on - strandat 3125.552 kb on - strandat 3125.552 kb on - strandat 3125.584 kb on + strandat 3125.588 kb on - strandat 3125.631 kb on + strand, within CCNA_03883at 3125.663 kb on - strand, within CCNA_03883at 3125.674 kb on + strand, within CCNA_03883at 3125.760 kb on + strand, within CCNA_03883at 3125.760 kb on + strand, within CCNA_03883at 3125.768 kb on - strand, within CCNA_03883at 3125.784 kb on - strand, within CCNA_03883at 3125.797 kb on + strand, within CCNA_03883at 3125.845 kb on + strand, within CCNA_03883at 3125.852 kb on + strand, within CCNA_03883at 3125.853 kb on - strand, within CCNA_03883at 3125.874 kb on - strand, within CCNA_03883at 3125.898 kb on + strand, within CCNA_03883at 3125.898 kb on + strand, within CCNA_03883at 3125.901 kb on - strand, within CCNA_03883at 3125.939 kb on + strand, within CCNA_03883at 3125.939 kb on + strand, within CCNA_03883at 3125.939 kb on + strand, within CCNA_03883at 3125.939 kb on + strand, within CCNA_03883at 3125.939 kb on + strand, within CCNA_03883at 3125.939 kb on + strand, within CCNA_03883at 3125.944 kb on + strand, within CCNA_03883at 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3125.947 kb on - strandat 3126.053 kb on + strandat 3126.073 kb on - strandat 3126.089 kb on + strandat 3126.089 kb on + strandat 3126.089 kb on + strandat 3126.097 kb on - strandat 3126.129 kb on - strand, within CCNA_02969at 3126.181 kb on + strand, within CCNA_02969at 3126.194 kb on - strand, within CCNA_02969at 3126.226 kb on + strand, within CCNA_02969at 3126.231 kb on - strand, within CCNA_02969at 3126.258 kb on + strand, within CCNA_02969at 3126.258 kb on + strand, within CCNA_02969at 3126.266 kb on - strand, within CCNA_02969at 3126.266 kb on - strand, within CCNA_02969at 3126.266 kb on - strand, within CCNA_02969at 3126.266 kb on - strand, within CCNA_02969at 3126.317 kb on - strand, within CCNA_02969at 3126.360 kb on + strand, within CCNA_02969at 3126.373 kb on - strand, within CCNA_02969at 3126.410 kb on + strand, within CCNA_02969at 3126.413 kb on - strand, within CCNA_02969at 3126.452 kb on - strand, within CCNA_02969at 3126.503 kb on + strand, within CCNA_02969at 3126.509 kb on + strand, within CCNA_02969at 3126.517 kb on - strand, within CCNA_02969at 3126.544 kb on - strand, within CCNA_02969at 3126.598 kb on + strandat 3126.603 kb on + strandat 3126.611 kb on + strandat 3126.611 kb on - strandat 3126.667 kb on + strandat 3126.668 kb on + strandat 3126.668 kb on + strandat 3126.676 kb on - strandat 3126.676 kb on - strandat 3126.686 kb on - strandat 3126.743 kb on - strand, within CCNA_02970at 3126.828 kb on - strand, within CCNA_02970at 3126.863 kb on - strand, within CCNA_02970at 3126.876 kb on + strand, within CCNA_02970at 3126.913 kb on + strand, within CCNA_02970at 3126.939 kb on - strand, within CCNA_02970at 3126.964 kb on + strand, within CCNA_02970at 3127.017 kb on + strandat 3127.075 kb on + strandat 3127.085 kb on + strandat 3127.085 kb on + strandat 3127.092 kb on + strandat 3127.100 kb on - strandat 3127.102 kb on - strandat 3127.109 kb on + strandat 3127.122 kb on + strandat 3127.123 kb on - strandat 3127.161 kb on + strand, within CCNA_02971at 3127.163 kb on + strand, within CCNA_02971at 3127.163 kb on + strand, within CCNA_02971at 3127.241 kb on - strand, within CCNA_02971at 3127.261 kb on - strand, within CCNA_02971at 3127.268 kb on - strand, within CCNA_02971at 3127.303 kb on + strand, within CCNA_02971at 3127.336 kb on + strand, within CCNA_02971at 3127.344 kb on - strand, within CCNA_02971at 3127.344 kb on - strand, within CCNA_02971at 3127.344 kb on - strand, within CCNA_02971at 3127.345 kb on - strand, within CCNA_02971at 3127.404 kb on + strand, within CCNA_02971at 3127.404 kb on + strand, within CCNA_02971at 3127.404 kb on + strand, within CCNA_02971at 3127.404 kb on + strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.412 kb on - strand, within CCNA_02971at 3127.421 kb on + strand, within CCNA_02971at 3127.429 kb on - strand, within CCNA_02971at 3127.437 kb on - strand, within CCNA_02971at 3127.442 kb on - strand, within CCNA_02971at 3127.455 kb on - strand, within CCNA_02971at 3127.484 kb on - strand, within CCNA_02971at 3127.499 kb on - strand, within CCNA_02971at 3127.530 kb on + strand, within CCNA_02971at 3127.535 kb on + strand, within CCNA_02971at 3127.541 kb on + strand, within CCNA_02971at 3127.548 kb on + strand, within CCNA_02971at 3127.573 kb on - strand, within CCNA_02971at 3127.607 kb on - strand, within CCNA_02971

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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3,125,066 + +0.6
3,125,081 + +1.0
3,125,081 + +0.1
3,125,147 + -0.4
3,125,172 - +0.3
3,125,187 + -0.4
3,125,195 - -0.1
3,125,195 - +0.2
3,125,219 - +0.3
3,125,229 - -0.0
3,125,242 - -0.6
3,125,242 - +0.1
3,125,242 - +0.5
3,125,244 - -0.5
3,125,278 - CCNA_03902 0.12 -0.4
3,125,302 + CCNA_03902 0.19 +0.0
3,125,321 + CCNA_03902 0.25 -0.1
3,125,334 - CCNA_03902 0.29 -0.3
3,125,354 - CCNA_03902 0.35 +0.5
3,125,355 - CCNA_03902 0.35 +0.3
3,125,355 - CCNA_03902 0.35 -0.3
3,125,355 - CCNA_03902 0.35 -0.8
3,125,355 - CCNA_03902 0.35 +0.5
3,125,399 - CCNA_03902 0.48 -0.1
3,125,408 + CCNA_03902 0.51 +0.6
3,125,443 + CCNA_03902 0.61 -1.0
3,125,446 - CCNA_03902 0.62 +1.4
3,125,446 - CCNA_03902 0.62 -0.2
3,125,446 - CCNA_03902 0.62 -1.2
3,125,451 - CCNA_03902 0.63 -0.1
3,125,517 + CCNA_03902 0.83 -0.2
3,125,542 - +0.9
3,125,552 - -0.0
3,125,552 - +0.4
3,125,584 + -0.2
3,125,588 - -0.3
3,125,631 + CCNA_03883 0.15 -0.3
3,125,663 - CCNA_03883 0.22 -1.1
3,125,674 + CCNA_03883 0.25 -0.6
3,125,760 + CCNA_03883 0.46 +0.2
3,125,760 + CCNA_03883 0.46 -0.9
3,125,768 - CCNA_03883 0.47 -0.7
3,125,784 - CCNA_03883 0.51 +0.3
3,125,797 + CCNA_03883 0.54 -1.9
3,125,845 + CCNA_03883 0.66 -0.1
3,125,852 + CCNA_03883 0.68 +0.4
3,125,853 - CCNA_03883 0.68 +1.4
3,125,874 - CCNA_03883 0.73 +0.1
3,125,898 + CCNA_03883 0.79 +0.2
3,125,898 + CCNA_03883 0.79 +0.6
3,125,901 - CCNA_03883 0.79 -1.0
3,125,939 + CCNA_03883 0.88 +0.0
3,125,939 + CCNA_03883 0.88 +1.2
3,125,939 + CCNA_03883 0.88 -0.4
3,125,939 + CCNA_03883 0.88 +2.1
3,125,939 + CCNA_03883 0.88 -0.6
3,125,939 + CCNA_03883 0.88 -0.1
3,125,944 + CCNA_03883 0.90 +0.6
3,125,947 - +0.1
3,125,947 - -0.1
3,125,947 - +0.4
3,125,947 - -1.3
3,125,947 - -1.0
3,125,947 - -0.1
3,125,947 - -0.2
3,125,947 - +0.4
3,125,947 - -1.1
3,125,947 - +0.2
3,126,053 + +0.3
3,126,073 - -0.4
3,126,089 + -0.2
3,126,089 + +0.5
3,126,089 + -1.1
3,126,097 - +0.4
3,126,129 - CCNA_02969 0.13 -0.7
3,126,181 + CCNA_02969 0.23 -0.3
3,126,194 - CCNA_02969 0.25 -1.0
3,126,226 + CCNA_02969 0.31 +0.4
3,126,231 - CCNA_02969 0.32 -0.1
3,126,258 + CCNA_02969 0.37 -0.1
3,126,258 + CCNA_02969 0.37 +0.8
3,126,266 - CCNA_02969 0.38 -0.1
3,126,266 - CCNA_02969 0.38 -0.1
3,126,266 - CCNA_02969 0.38 +1.3
3,126,266 - CCNA_02969 0.38 +0.4
3,126,317 - CCNA_02969 0.47 +1.4
3,126,360 + CCNA_02969 0.55 -0.1
3,126,373 - CCNA_02969 0.57 -0.1
3,126,410 + CCNA_02969 0.64 +0.4
3,126,413 - CCNA_02969 0.65 -1.0
3,126,452 - CCNA_02969 0.72 -2.5
3,126,503 + CCNA_02969 0.81 +0.1
3,126,509 + CCNA_02969 0.82 +1.9
3,126,517 - CCNA_02969 0.83 -1.1
3,126,544 - CCNA_02969 0.88 -1.1
3,126,598 + +0.0
3,126,603 + -0.3
3,126,611 + -0.5
3,126,611 - +0.2
3,126,667 + +0.3
3,126,668 + +0.0
3,126,668 + -1.4
3,126,676 - +0.4
3,126,676 - -0.2
3,126,686 - -1.1
3,126,743 - CCNA_02970 0.24 +0.1
3,126,828 - CCNA_02970 0.47 +0.4
3,126,863 - CCNA_02970 0.57 +0.4
3,126,876 + CCNA_02970 0.60 -0.1
3,126,913 + CCNA_02970 0.70 -0.9
3,126,939 - CCNA_02970 0.77 +0.5
3,126,964 + CCNA_02970 0.84 -1.0
3,127,017 + -0.1
3,127,075 + +0.3
3,127,085 + -1.4
3,127,085 + -0.3
3,127,092 + -0.7
3,127,100 - +1.8
3,127,102 - +0.3
3,127,109 + -0.0
3,127,122 + +0.2
3,127,123 - +0.1
3,127,161 + CCNA_02971 0.13 +0.5
3,127,163 + CCNA_02971 0.13 -1.2
3,127,163 + CCNA_02971 0.13 -0.8
3,127,241 - CCNA_02971 0.21 -0.2
3,127,261 - CCNA_02971 0.23 +0.3
3,127,268 - CCNA_02971 0.24 +0.0
3,127,303 + CCNA_02971 0.27 -1.0
3,127,336 + CCNA_02971 0.30 -1.5
3,127,344 - CCNA_02971 0.31 +0.2
3,127,344 - CCNA_02971 0.31 +0.6
3,127,344 - CCNA_02971 0.31 -0.1
3,127,345 - CCNA_02971 0.31 -0.2
3,127,404 + CCNA_02971 0.37 -2.0
3,127,404 + CCNA_02971 0.37 -0.4
3,127,404 + CCNA_02971 0.37 -1.6
3,127,404 + CCNA_02971 0.37 -1.2
3,127,412 - CCNA_02971 0.38 +0.7
3,127,412 - CCNA_02971 0.38 +0.2
3,127,412 - CCNA_02971 0.38 +0.5
3,127,412 - CCNA_02971 0.38 -0.2
3,127,412 - CCNA_02971 0.38 +0.8
3,127,412 - CCNA_02971 0.38 +0.3
3,127,412 - CCNA_02971 0.38 +0.4
3,127,421 + CCNA_02971 0.38 -0.1
3,127,429 - CCNA_02971 0.39 +0.5
3,127,437 - CCNA_02971 0.40 +0.1
3,127,442 - CCNA_02971 0.41 +0.3
3,127,455 - CCNA_02971 0.42 +0.5
3,127,484 - CCNA_02971 0.45 +1.0
3,127,499 - CCNA_02971 0.46 +0.2
3,127,530 + CCNA_02971 0.49 -0.9
3,127,535 + CCNA_02971 0.50 -0.2
3,127,541 + CCNA_02971 0.50 -1.0
3,127,548 + CCNA_02971 0.51 -1.0
3,127,573 - CCNA_02971 0.53 +0.7
3,127,607 - CCNA_02971 0.57 -0.0

Or see this region's nucleotide sequence