Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02705

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02704 and CCNA_02705 are separated by 120 nucleotidesCCNA_02705 and CCNA_R0064 are separated by 246 nucleotidesCCNA_R0064 and CCNA_R0065 are separated by 63 nucleotidesCCNA_R0065 and CCNA_R0066 are separated by 98 nucleotides CCNA_02704: CCNA_02704 - NADP-dependent malic enzyme, at 2,859,445 to 2,861,721 _02704 CCNA_02705: CCNA_02705 - cold shock protein CspC, at 2,861,842 to 2,862,051 _02705 CCNA_R0064: CCNA_R0064 - tRNA-Met, at 2,862,298 to 2,862,374 _R0064 CCNA_R0065: CCNA_R0065 - 5S ribosomal RNA, at 2,862,438 to 2,862,555 _R0065 CCNA_R0066: CCNA_R0066 - 23S ribosomal RNA, at 2,862,654 to 2,865,446 _R0066 Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -1 0 1at 2861.131 kb on + strand, within CCNA_02704at 2861.389 kb on + strand, within CCNA_02704at 2861.610 kb on + strandat 2862.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,861,131 + CCNA_02704 0.74 -0.3
2,861,389 + CCNA_02704 0.85 -1.5
2,861,610 + +0.5
2,862,132 - +0.4

Or see this region's nucleotide sequence